PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G288900.2.p
Common NameGLYMA_06G288900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HB-other
Protein Properties Length: 1451aa    MW: 163783 Da    PI: 6.1439
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G288900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.81.5e-171974156
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                         ++kR   t++qle+Le++++ + yps++ r+eL+ kl+L++rq ++WF+ rR k++
  Glyma.06G288900.2.p 19 KSKRKMKTASQLEVLEKAYAAEAYPSEALRAELSVKLSLSDRQLQMWFCHRRLKDR 74
                         679***************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.3E-17475IPR009057Homeodomain-like
SuperFamilySSF466891.15E-141577IPR009057Homeodomain-like
PROSITE profilePS5007116.0341676IPR001356Homeobox domain
SMARTSM003897.8E-161880IPR001356Homeobox domain
PfamPF000464.7E-151974IPR001356Homeobox domain
CDDcd000861.37E-121977No hitNo description
SMARTSM005711.2E-21557616IPR018501DDT domain
PROSITE profilePS5082716.592557616IPR018501DDT domain
PfamPF027917.9E-17558613IPR018501DDT domain
PfamPF050665.9E-15739806IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156123.7E-8951993IPR028942WHIM1 domain
PfamPF156133.4E-1311341205IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1451 aa     Download sequence    Send to blast
MEGVSEGEKK KEPVEGENKS KRKMKTASQL EVLEKAYAAE AYPSEALRAE LSVKLSLSDR  60
QLQMWFCHRR LKDRNAKKLQ NDSSLAGAPA VGEEGVEQVT GADVGRDCGL ASGPFDHLDS  120
RKIVPRPGMT AFPSMGAGLP AVVGSSYYEP PQNMDVLQVV AFVERQLGEP IREDGPILGM  180
EFDSLPPDAF GAPIGIVTMG QHRQCGGPFE AKIYEQLDKD VSRTLHEYQF IPEKPSVRNE  240
TYERVAPSIH YSSLDGIPHS RTLLSSGRSF LNGNESAPYG YGIQGHLPGL NLLSRQGRQN  300
HLLPSASGEN DGIPRKNPFV DVTADIHNGA HPITLIDSPL MPSDGRVIHV EELSRLQRKR  360
KNDDTKMQQE LEAQERKNRK ELEKQDILRQ KREEQTKKEM ERHERERQKE EERLLRERQK  420
EEERLLRERQ REEERYQREQ RREQERRQKF LQKESIRAEK LRQKEELRRE KEAARIKAAN  480
ERAIARRIAK ESIELIEDER LELMELAASK KELSSILALD YETIQNLEFY RDGRASFPPK  540
SVQLKRIFSI KPWSDSDENV GNLLMVWRFL ITFADVLGIW PFTVDELIQA FHDHDPRLLG  600
EIHIALLKSI IKDIEDVART PSTGLGCNQH SVTNSGGGHP QVVEGAYLWG FDIRNWQRHL  660
NPLTWPEILR QFALSAGFGP QLKKLSIEQV HPCNNNEGND GRDIISNLRS GAAVENAVAI  720
MQEKGLSNPR RSRHCLTPGT VKFAAFHVLS LEGSKGLNIL EVADKIQKSG LRDLTTSKTP  780
EASISAALSR DTKLFERTAP STYCVRPAYR KDPADSEAIY SGARERIRMF KSGFVEAEAA  840
DNGERDEDSE SDMEEDPEID DLGTETNAKK ESSNYEGFNA DSEMRNRKDS VEVLQTHDTS  900
LEKVGEDLAS IVAKDFNEHK DVSTSSGIAV CNNDVVDPNV KGIAVDESIP GEPWIQGLTE  960
GEYSDLSVVE RLHALVALIG VATEGNSIRV VLEERLEAAN ALKKQMWAEA QLDKRRIKED  1020
YFAKMQSVSY LDKTNELTVV FPSADSKHSP VLIADDKNSK ALLNSHDLHE QSIELQENQN  1080
HLQSSPLKVN KQMQDCSTGP DNYSFQHSGY VVEKSRSNLK SYIGHLAEQT YMYRSLPLGL  1140
DRRRNRYWQF TTSAQNDPGC GRIFVELNDG RWKLIDSEEG FDALLASLDV RGIRESHLHM  1200
MLQRIETYFK EFVRKNAQNV NMRMQNGDPV ERLKTESVEM ASNQDCSANI HGSSSVCIDN  1260
LDASETSTSF VVQLGRNEAD NKDACMRYWD FEKWMRKECL NFSVLSAMKF GKKWCHQLQS  1320
ICDLCLHAYF SGGAPCSSCC RTFSACKSNP SSSKHIVHSE GKVKIDIDCF HASSSLSLRI  1380
RLLKILLSIV EVTLPLEALQ PLWRDSCRKS WSTKLDASSS SEDLLQDIIS FSDIDGIGRC  1440
YKEGVFGFKL *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.421820.0cotyledon
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269|PubMed:22694359}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:23872538}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G288900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006582300.10.0homeobox-DDT domain protein RLT2 isoform X1
RefseqXP_028238082.10.0homeobox-DDT domain protein RLT2-like isoform X1
SwissprotQ9FFH10.0RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBLK7KY060.0K7KY06_SOYBN; Uncharacterized protein
STRINGGLYMA06G44290.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.10.0Homeodomain-like transcriptional regulator