PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.06G283300.1.p | ||||||||
Common Name | GLYMA_06G283300, LOC100784966 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 260aa MW: 28910 Da PI: 6.3756 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.1 | 6.3e-13 | 73 | 119 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+Er+RR+riN +++Lr+++P a K++Ka+ L ++++++k+L Glyma.06G283300.1.p 73 KSHSEAERKRRARINAHLDTLRSVIPGA-----MKMDKASLLGEVIRHLKEL 119 58*************************9.....7****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.018 | 70 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.75E-12 | 73 | 121 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.1E-13 | 73 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-10 | 73 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.53E-13 | 74 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-12 | 76 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 7.57E-7 | 158 | 200 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 4.1E-5 | 158 | 200 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MEMEDFLWGG GIDEDVTKRK SDGFEGSNGV IGSGWCGSSF SLVLDRERGE LVEEPVRLEK 60 KGVSTERSIE ALKSHSEAER KRRARINAHL DTLRSVIPGA MKMDKASLLG EVIRHLKELK 120 KNAAQACEGL MIPKDNDEIS VEEQEGGLNG FPYSIRASLC CEYKPGLLSD IKQALDALHL 180 MITRADIATL EGRMKNVFVI ISCKEQNFED AAYRQFLAVS VHQALKSVLN RFSVSEDILG 240 TRKRRRISIF SSSSLEDFL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 241 | 245 | RKRRR |
2 | 242 | 246 | KRRRI |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.61311 | 0.0 | hypocotyl |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.06G283300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093701 | 0.0 | BT093701.1 Soybean clone JCVI-FLGm-17L23 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003527389.1 | 0.0 | transcription factor bHLH30 | ||||
Refseq | XP_028238036.1 | 0.0 | transcription factor bHLH30-like | ||||
TrEMBL | A0A0B2PJM2 | 0.0 | A0A0B2PJM2_GLYSO; Transcription factor bHLH30 | ||||
TrEMBL | I1KES7 | 0.0 | I1KES7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G43560.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10685 | 25 | 38 | Representative plant | OGRP377 | 15 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 9e-31 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.06G283300.1.p |
Entrez Gene | 100784966 |