PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G260000.1.p
Common NameGLYMA_06G260000, LOC100797286
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 490aa    MW: 53827.8 Da    PI: 7.1163
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G260000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.67.2e-063804181154
                          HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Glyma.06G260000.1.p 380 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 418
                          5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.576369418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-11379436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.05E-7379422No hitNo description
SMARTSM003530.0049380424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-9383426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MSDDQFQASG NWWESAARNV RFESGESQSS SSGLTNNMGS YEASWQHHDM ATTRSSNSSI  60
DNNSVSGGSS VMFHDQKQLQ QVQPHHHESS AAATSTNDPN LHMMGLGLSS QAMDWNQASL  120
QLRGEKGSES SFRSMLQENL SSSNTNFQPQ ESGSNIGLSQ HHHHHHHHQQ LHWRPEKLFS  180
AESSSNEFKR GFSLDQTQFS PQYSSGDSTV TSQGLPCSFQ MDYVGNPSSI LQGLLGQESN  240
NNNNQQQQQP YQGGGGGAMN FAYSAAASYG LNSNVELVRS WSKVPQFLRA SPPKQQPNNQ  300
LHFTNNAPFW NANSEPAIKD SRSSFIPSLH PPFSTSNFDV QSKNISEVRD SGGVVKKSGS  360
EAAPKRPRNE TPSPLPAFKV RKEKMGDRIT ALQQLVSPFG KTDTASVLSE AIEYIKFLHE  420
QVTVLSTPYM KSGAPIQHQQ SSGKSKESEG PKQDLRSRGL CLVPVSSTFP VTHEPTVEYW  480
TPTFGGTYR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G260000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0949230.0BT094923.1 Soybean clone JCVI-FLGm-19G7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003526151.10.0transcription factor bHLH123
TrEMBLI1KE980.0I1KE98_SOYBN; Uncharacterized protein
STRINGGLYMA06G40760.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111833106
Representative plantOGRP31351129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.12e-79bHLH family protein