PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.06G248900.1.p | ||||||||
Common Name | GLYMA_06G248900, Glyma06g38410.1, SNAC23 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 338aa MW: 37897.8 Da PI: 6.9365 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.5 | 9e-52 | 14 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrF Ptdeel+v+yL++kv+g++++l +i+evd+yk++Pw Lp k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk Glyma.06G248900.1.p 14 LPPGFRFYPTDEELLVQYLCRKVAGHHFSL-PIIAEVDLYKFDPWVLPGKAVFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDK 102 79**************************99.88***************7777899*********************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +g++vg+kk Lvfy g+apkg+kt+W+mheyrl Glyma.06G248900.1.p 103 IITT-EGRKVGIKKALVFYIGKAPKGSKTNWIMHEYRL 139 9999.999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.05E-65 | 10 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.323 | 14 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-26 | 15 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MGVPERDPLA QLSLPPGFRF YPTDEELLVQ YLCRKVAGHH FSLPIIAEVD LYKFDPWVLP 60 GKAVFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKIITTEGRK VGIKKALVFY 120 IGKAPKGSKT NWIMHEYRLL DSSRKHNLGT AKLDDWVLCR IYKKNSSSQK VEANFLAMEC 180 SNGSSPSSSS HVDDMLGSLP EINDRCFTLP RVNSLRTMHQ QDEKFGSPNM GSGFFSDWVN 240 STDLDSISEF ESGCQTQRMV NYDCNDFFVP SLPPLGHVDY MVDAPLEEEV QSGVRTRRVD 300 GPGHFQPNPD TRLLPGSGDP FGFGFIMGQQ VGFGVRE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-104 | 1 | 170 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-104 | 1 | 170 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-104 | 1 | 170 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-104 | 1 | 170 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-104 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-104 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-104 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-104 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-104 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-104 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-104 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-104 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-104 | 1 | 170 | 4 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-104 | 1 | 170 | 4 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.26856 | 0.0 | flower| hypocotyl| leaf| meristem| seed coat |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in guard cells of the epidermis. {ECO:0000269|PubMed:25005917}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.06G248900.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:30610166}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF657304 | 0.0 | KF657304.1 Glycine max NAC transcription factor (SNAC23) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001238234.2 | 0.0 | NAC domain protein NAC3 | ||||
Swissprot | A0A3Q7HH64 | 1e-127 | JA2L_SOLLC; NAC domain-containing protein JA2L | ||||
TrEMBL | I1KE01 | 0.0 | I1KE01_SOYBN; NAC transcription factor | ||||
STRING | GLYMA06G38410.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4429 | 33 | 60 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27410.2 | 1e-116 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.06G248900.1.p |
Publications ? help Back to Top | |||
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