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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.06G232300.1.p |
Common Name | GLYMA_06G232300, LOC100810078 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
TCP |
Protein Properties |
Length: 392aa MW: 42483.6 Da PI: 6.9169 |
Description |
TCP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.06G232300.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | TCP | 116.7 | 3e-36 | 42 | 170 | 2 | 114 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssa.....sece 74
+g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak+ai++l+++ + +ce
Glyma.06G232300.1.p 42 TGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDQLAELppwnptatsmqpR---QlpqeiVHCE 128
79**************************************************************8866555433331...0222221121 PP
TCP 75 aesssssasnsssg.............kaaksaakskksqksaasalnlakes 114
++s + +++++ s+++ +++++a+n++ +s
Glyma.06G232300.1.p 129 NKSL---------AmddsmtaafssrgESNAF--ASHQQVEDNENANNISSSS 170
1111.........1222222333321122222..3333333333334554444 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 392 aa
Download sequence Send
to blast |
MGELQHHQQQ AAAAAAPSRA AMRGVGGGEI VEVQGGHIVR STGRKDRHSK VCTAKGPRDR 60 RVRLAAHTAI QFYDVQDRLG YDRPSKAVDW LIKKAKAAID QLAELPPWNP TATSMQPRQL 120 PQEIVHCENK SLAMDDSMTA AFSSRGESNA FASHQQVEDN ENANNISSSS GNKYNTGSGF 180 LPASLDTDNI AETIKTFFPV EATSTSFQSY PPAPPDLGHQ DLRLSLQSFQ DPIMLHHQPH 240 SHHQPVLFAG TAAAALDFDG GSGWSEHLHQ HQQQNHHSEE QRLLYAGGNS GHGGGFVFNT 300 PAPVQVPAFG QFFSQRGPLQ SSNTPSIRAW IDPSVDHHHH HHHYLSQLIH QGSVAGGGGF 360 SGFRIPARIQ GEEEHDGVSD KPSSASSDSR H*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: First observed in the distal and middle regions of cotyledons of torpedo-shaped embryos. Later localized in bending cotyledon, and mature embryos, but no signals were detected in the presumptive shoot apical meristem (SAM) and the boundary region during embryogenesis. During flower development, first observed throughout the floral meristem. Later expressed in rapidly growing floral primordia. Detected to a lower extent in vegetative primordia. During flower development, first observed throughout the floral meristem. Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:10363373, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, roots, buds, flowers and immature siliques. {ECO:0000269|PubMed:17307931}. |
Functional Description ? help
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Source |
Description |
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP015039 | 3e-93 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT1G53230.1 | 5e-70 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 |
Publications
? help Back to Top |
- Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] - Koyama T,Sato F,Ohme-Takagi M
Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] - Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] - Mazur MJ, et al.
Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]
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