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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.06G225200.1.p |
Common Name | GLYMA_06G225200 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
AP2 |
Protein Properties |
Length: 352aa MW: 40076.3 Da PI: 7.2638 |
Description |
AP2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.06G225200.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 38.7 | 2.5e-12 | 44 | 100 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
s y+GV++++++gr++A+++d ++n ++k+ + g ++ +e Aa a++ a++k++g
Glyma.06G225200.1.p 44 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEEAAAHAYDLAALKYWG 100
57*******************99998898888888********************98 PP
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2 | AP2 | 51.3 | 3e-16 | 143 | 194 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g
Glyma.06G225200.1.p 143 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 194
89****99**********99966...3.6*************************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 352 aa
Download sequence Send
to blast |
MAKQQTHEIN ASTNNNINTT KTVTTKVKRT RRSVPRNSPP QRSSIYRGVT RHRWTGRYEA 60 HLWDKNCWNE SQNKKGRQGA YDDEEAAAHA YDLAALKYWG QDTILNFPLS TYQNELKEME 120 GQSREEYIGS LRRKSSGFSR GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL YLGTYATQEE 180 AATAYDMAAI EYRGLNAVTN FDLSRYIKWL KPNNNNNKVN SNNLIVSIPN CATNFTPNSN 240 QQQGFNFFNS QESFNNNEEA AMTQPRPAAA TSALGLLLQS SKFKEMMEMT SAIDLSTPPS 300 ESELPPCTFP DDIQTYFECE DSHRYGEGDD IMFSELNGFV PPMFHCDDFE A*
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Functional Description ? help
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Source |
Description |
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC235168 | 0.0 | AC235168.1 Glycine max strain Williams 82 clone GM_WBb0001B19, complete sequence. |
GenBank | AC235416 | 0.0 | AC235416.1 Glycine max strain Williams 82 clone GM_WBb0132F05, complete sequence. |