PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

AP2

Protein Properties

Length: 352aa MW: 40076.3 Da PI: 7.2638

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.06G225200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	38.7	2.5e-12	44	100	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n ++k+ + g ++ +e Aa a++ a++k++g Glyma.06G225200.1.p 44 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEEAAAHAYDLAALKYWG 100 57*****************99998898888888******************98 PP
2	AP2	51.3	3e-16	143	194	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g Glyma.06G225200.1.p 143 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 194 89**99******99966...3.6***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	2.4E-8	44	100	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.35E-15	44	110	IPR016177	DNA-binding domain
SMART	SM00380	2.0E-20	45	114	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.4E-13	45	109	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	18.821	45	108	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.9E-6	46	57	IPR001471	AP2/ERF domain
Pfam	PF00847	5.5E-12	143	194	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	9.81E-18	143	204	IPR016177	DNA-binding domain
CDD	cd00018	7.14E-24	143	204	No hit	No description
SMART	SM00380	1.2E-24	144	208	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.1E-17	144	203	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	18.334	144	202	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.9E-6	184	204	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MAKQQTHEIN ASTNNNINTT KTVTTKVKRT RRSVPRNSPP QRSSIYRGVT RHRWTGRYEA 60 HLWDKNCWNE SQNKKGRQGA YDDEEAAAHA YDLAALKYWG QDTILNFPLS TYQNELKEME 120 GQSREEYIGS LRRKSSGFSR GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL YLGTYATQEE 180 AATAYDMAAI EYRGLNAVTN FDLSRYIKWL KPNNNNNKVN SNNLIVSIPN CATNFTPNSN 240 QQQGFNFFNS QESFNNNEEA AMTQPRPAAA TSALGLLLQS SKFKEMMEMT SAIDLSTPPS 300 ESELPPCTFP DDIQTYFECE DSHRYGEGDD IMFSELNGFV PPMFHCDDFE A*

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MAKQQTHEIN ASTNNNINTT KTVTTKVKRT RRSVPRNSPP QRSSIYRGVT RHRWTGRYEA  60
HLWDKNCWNE SQNKKGRQGA YDDEEAAAHA YDLAALKYWG QDTILNFPLS TYQNELKEME  120
GQSREEYIGS LRRKSSGFSR GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL YLGTYATQEE  180
AATAYDMAAI EYRGLNAVTN FDLSRYIKWL KPNNNNNKVN SNNLIVSIPN CATNFTPNSN  240
QQQGFNFFNS QESFNNNEEA AMTQPRPAAA TSALGLLLQS SKFKEMMEMT SAIDLSTPPS  300
ESELPPCTFP DDIQTYFECE DSHRYGEGDD IMFSELNGFV PPMFHCDDFE A*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.29417	0.0	root

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.06G225200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235168	0.0	AC235168.1 Glycine max strain Williams 82 clone GM_WBb0001B19, complete sequence.
GenBank	AC235416	0.0	AC235416.1 Glycine max strain Williams 82 clone GM_WBb0132F05, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025984526.1	0.0	AP2-like ethylene-responsive transcription factor At1g16060
Refseq	XP_028234292.1	0.0	AP2-like ethylene-responsive transcription factor At1g16060
Swissprot	Q94AN4	1e-113	AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBL	A0A0B2QN70	0.0	A0A0B2QN70_GLYSO; AP2-like ethylene-responsive transcription factor
TrEMBL	K7KWP8	0.0	K7KWP8_SOYBN; Uncharacterized protein
STRING	GLYMA06G30840.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1300	34	101
Representative plant	OGRP112	17	209

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79700.2	4e-89	AP2 family protein

Link Out ? help Back to Top
Phytozome	Glyma.06G225200.1.p

Publications ? help Back to Top
Todd J,Post-Beittenmiller D,Jaworski JG KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana. Plant J., 1999. 17(2): p. 119-30 [PMID:10074711] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]