PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G209000.4.p
Common NameGLYMA_06G209000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YB
Protein Properties Length: 134aa    MW: 14803.8 Da    PI: 4.4929
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G209000.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB64.22.8e-201181373
                NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalat 73
                         ++d+ lP a +++i+k++lP + ++++da++++ ec +efi +v+se+++ c++e+r+ti+++ +l al++
  Glyma.06G209000.4.p 11 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCNKEERRTIAPEHVLKALGQ 81
                         6899***************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.6E-27880IPR009072Histone-fold
SuperFamilySSF471136.45E-2912121IPR009072Histone-fold
PfamPF008081.3E-221479IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MEPMDIVGKA KEDASLPKAT MTKIIKEMLP PDVRVARDAQ DLLIECCVEF INLVSSESNE  60
VCNKEERRTI APEHVLKALG QDSLKGAKWS NRAEMTEEEA LAEQQRMFAE ARARMNGGAI  120
QSKEPEADQS LES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B9e-271211212133Transcription Regulator NC2 beta chain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.42051e-124cotyledon| flower| hypocotyl| leaf| meristem| pod| root| seed coat| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G209000.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0927150.0BT092715.1 Soybean clone JCVI-FLGm-11H15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001350891.14e-93class 2 transcription repressor NC2 beta 2 isoform 2
RefseqXP_028237422.14e-93protein Dr1 homolog isoform X2
SwissprotP495923e-68NC2B_ARATH; Protein Dr1 homolog
TrEMBLC6T5K38e-92C6T5K3_SOYBN; Uncharacterized protein
STRINGXP_007138352.11e-84(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.21e-70nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Song W,Solimeo H,Rupert RA,Yadav NS,Zhu Q
    Functional dissection of a Rice Dr1/DrAp1 transcriptional repression complex.
    Plant Cell, 2002. 14(1): p. 181-95
    [PMID:11826307]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]