PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G204300.1.p
Common NameGLYMA_06G204300, LOC100804574
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 391aa    MW: 43113.1 Da    PI: 9.6905
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G204300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP90.63.4e-2855143383
                  TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssasec..eaesssssas 83 
                          g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl++ k  i++l+ +       ++ ++ ++     ++ss+as
  Glyma.06G204300.1.p  55 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLSQPSKVIDWLLEATKFDIDKLPPLqfpqgfgQFHHHPQTlfP-FHESSAAS 143
                          79*************************************************************555555522222222321.11111111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.28756114IPR017887Transcription factor TCP subgroup
PfamPF036342.8E-2656168IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MMLTMMASSR EGYQAKQEGD TTTNIDKFSK ASSTTSRQWS AFRNPRIVRV SRSFGGKDRH  60
SKVCTIRGLR DRRIRLSVPT AIQLYDLQDK LGLSQPSKVI DWLLEATKFD IDKLPPLQFP  120
QGFGQFHHHP QTLFPFHESS AASHQLSLGP FSDASSTFVR DGGIQNLMAK SRYWENINSM  180
SRLRGNKEAE KGKWIKTSEE ENHDQDGVVG GYNNLQVSTQ RLFPMGSSTT TTTHSLLPGL  240
LNNSMPYNAY SSEPSSLSLS QFGSHGLFPS QQVDPNPSSG NNGVQFQSSL SLPSSGSQLL  300
FGSSSATPSM FTTYAPFIAP SVDPDPRQFN HIHQFLNSGS QILPPHPLIP SLHHPFNSQI  360
RPFPAALFSS KLLDSDSSNH SQQDHKGSTS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-1861115155Putative transcription factor PCF6
5zkt_B4e-1861115155Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G204300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003528227.20.0transcription factor TCP5
TrEMBLI1KD230.0I1KD23_SOYBN; Uncharacterized protein
STRINGGLYMA06G22240.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.12e-55TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5