PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G182200.2.p
Common NameGLYMA_06G182200, LOC100806697
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Dof
Protein Properties Length: 328aa    MW: 35855.9 Da    PI: 8.1651
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G182200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.21e-392987462
               zf-Dof  4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                          alkcprC+st+tkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rknkk+s
  Glyma.06G182200.2.p 29 LALKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVS 87
                         5789****************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074787.0E-292181IPR003851Zinc finger, Dof-type
PfamPF027011.6E-333085IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.0593185IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103369IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MDSSSSPSGD MLTCSRPMIE RRLRPPHDLA LKCPRCESTH TKFCYYNNYS LSQPRYFCKT  60
CRRYWTKGGT LRNIPVGGGC RKNKKVSAKK SNNDHQLVNN NNSPTQPPPS SSYHHHSHPK  120
DLQLSSFPDV QFSHLSNLLG TNIANPSFME GKYGIGMIEN PRPIDFMMES KLEGIIGSGS  180
SSRNNFDFFG NSDMSMGMTS VGLGDMNSTQ NGLPPNFHHH GLSAFGGMSM SMSLDHGNNN  240
NNSGGNGGSN NYLMDSCQRL MLPYASSNED HNAPIDVKPN PKQLLSLEWQ DQGCSDAGKD  300
SFGYLNGPGS WTGMMNGYGS STTNPLV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.503260.0meristem| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G182200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003527017.10.0dof zinc finger protein DOF5.6
RefseqXP_028237115.10.0dof zinc finger protein DOF5.6-like
TrEMBLA0A0R0JIS70.0A0A0R0JIS7_SOYBN; Uncharacterized protein
TrEMBLA0A445KBG00.0A0A445KBG0_GLYSO; Dof zinc finger protein DOF5.6 isoform B
TrEMBLA0A445KBG40.0A0A445KBG4_GLYSO; Dof zinc finger protein DOF5.6 isoform A
TrEMBLI1KCF80.0I1KCF8_SOYBN; Uncharacterized protein
STRINGGLYMA06G19330.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62940.11e-49Dof family protein