PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G152200.3.p
Common NameGLYMA_06G152200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 703aa    MW: 77456.1 Da    PI: 7.5723
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G152200.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.87.7e-08729326
                         S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                         t +Cr+fa+ G C++G+ C+F H+
  Glyma.06G152200.3.p  7 TQPCRDFAA-GKCRRGSHCHFLHD 29
                         789******.*************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.61431IPR000571Zinc finger, CCCH-type
SMARTSM003560.0012430IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-6730IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-5729IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.2116390IPR000571Zinc finger, CCCH-type
SMARTSM003560.866389IPR000571Zinc finger, CCCH-type
PfamPF146080.196987No hitNo description
SuperFamilySSF902293.01E-5126151IPR000571Zinc finger, CCCH-type
SMARTSM003560.013126152IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.695126153IPR000571Zinc finger, CCCH-type
PfamPF146080.0067132150No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MRAGGSTQPC RDFAAGKCRR GSHCHFLHDN QNHEDGWEDK YREDGAPRYS APREGRDYSL  60
KSGRSDEACI NFPKGRCRMG ASCKFVHHNN SDGHSKVSVD GLTREREIDR RHRDSSFEQG  120
SGHGPNRGDT LCKFFANESC RNGKYCRFSH DRQACRSHNR RLRDDRWASN PGGDYHMLDR  180
PKLSDSVSPN RRPRGDRWGS DGNKADADKV WDSPERNDTV AVSDTAKLVE DKSENVVAAE  240
QGFTPLAMRD GWGHSLDKSR VHSKQPFSSD KKEADSWIAG NAANMHGSQS VGTDIWLGDD  300
AKMSPDWDYR VRSSSCIEEK HEQNKHGITQ GFMYLATSEH DRIQIAPGQD FNQNAESFNP  360
LHSSSCQVVG QTQVAAPILP SQGGIVDGML KQEVSTEKKY TTEPNIMDAG LLQVSSRDPP  420
PTENVVGKEQ LAQLTNLSAS LAHILGTGQQ LPQLYAALNS HDAKGTSSLA KAEVLAMPLS  480
NTLIRPDPAV GLLKQYDPMC DSVEPKSAVA SSGVTPAIPP CKKVAEDVVE ISSQSNTARQ  540
NCGNSSKSAG SEELVKSDPL ILLQPGQNIG VNKDDNKEVL PEERQKSKDD PKNTKESGPL  600
ENMEQTDGPD EAKKTKGMKG SRAFKFALVE FVKELLKPTW KDGQITKDDY KTIVKKVVDK  660
VTGSMQGANI PQTQEKIDHY LSFSKPKLNK LVQAYVEKVQ KA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.222000.0cotyledon| hypocotyl| leaf| meristem| somatic embryo| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G152200.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025984681.10.0zinc finger CCCH domain-containing protein 38 isoform X2
TrEMBLA0A0R0JNS00.0A0A0R0JNS0_SOYBN; Uncharacterized protein
STRINGGLYMA06G15720.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-11C3H family protein