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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.06G152200.3.p | ||||||||
Common Name | GLYMA_06G152200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C3H | ||||||||
Protein Properties | Length: 703aa MW: 77456.1 Da PI: 7.5723 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.8 | 7.7e-08 | 7 | 29 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 t +Cr+fa+ G C++G+ C+F H+ Glyma.06G152200.3.p 7 TQPCRDFAA-GKCRRGSHCHFLHD 29 789******.*************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 15.61 | 4 | 31 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0012 | 4 | 30 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.5E-6 | 7 | 30 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.9E-5 | 7 | 29 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.211 | 63 | 90 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.86 | 63 | 89 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.19 | 69 | 87 | No hit | No description |
SuperFamily | SSF90229 | 3.01E-5 | 126 | 151 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.013 | 126 | 152 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.695 | 126 | 153 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.0067 | 132 | 150 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 703 aa Download sequence Send to blast |
MRAGGSTQPC RDFAAGKCRR GSHCHFLHDN QNHEDGWEDK YREDGAPRYS APREGRDYSL 60 KSGRSDEACI NFPKGRCRMG ASCKFVHHNN SDGHSKVSVD GLTREREIDR RHRDSSFEQG 120 SGHGPNRGDT LCKFFANESC RNGKYCRFSH DRQACRSHNR RLRDDRWASN PGGDYHMLDR 180 PKLSDSVSPN RRPRGDRWGS DGNKADADKV WDSPERNDTV AVSDTAKLVE DKSENVVAAE 240 QGFTPLAMRD GWGHSLDKSR VHSKQPFSSD KKEADSWIAG NAANMHGSQS VGTDIWLGDD 300 AKMSPDWDYR VRSSSCIEEK HEQNKHGITQ GFMYLATSEH DRIQIAPGQD FNQNAESFNP 360 LHSSSCQVVG QTQVAAPILP SQGGIVDGML KQEVSTEKKY TTEPNIMDAG LLQVSSRDPP 420 PTENVVGKEQ LAQLTNLSAS LAHILGTGQQ LPQLYAALNS HDAKGTSSLA KAEVLAMPLS 480 NTLIRPDPAV GLLKQYDPMC DSVEPKSAVA SSGVTPAIPP CKKVAEDVVE ISSQSNTARQ 540 NCGNSSKSAG SEELVKSDPL ILLQPGQNIG VNKDDNKEVL PEERQKSKDD PKNTKESGPL 600 ENMEQTDGPD EAKKTKGMKG SRAFKFALVE FVKELLKPTW KDGQITKDDY KTIVKKVVDK 660 VTGSMQGANI PQTQEKIDHY LSFSKPKLNK LVQAYVEKVQ KA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.22200 | 0.0 | cotyledon| hypocotyl| leaf| meristem| somatic embryo| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.06G152200.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025984681.1 | 0.0 | zinc finger CCCH domain-containing protein 38 isoform X2 | ||||
TrEMBL | A0A0R0JNS0 | 0.0 | A0A0R0JNS0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G15720.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 2e-11 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.06G152200.3.p |