PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G152200.1.p
Common NameGLYMA_06G152200, LOC100803151
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 829aa    MW: 91865.8 Da    PI: 8.3767
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G152200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.69.3e-08133155326
                          S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                          t +Cr+fa+ G C++G+ C+F H+
  Glyma.06G152200.1.p 133 TQPCRDFAA-GKCRRGSHCHFLHD 155
                          789******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0012130156IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.61130157IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-6133156IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-5133155IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.211189216IPR000571Zinc finger, CCCH-type
SMARTSM003560.86189215IPR000571Zinc finger, CCCH-type
PfamPF146080.23195213No hitNo description
PROSITE profilePS5010313.695252279IPR000571Zinc finger, CCCH-type
SMARTSM003560.013252278IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-5252277IPR000571Zinc finger, CCCH-type
PfamPF146080.008258276No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 829 aa     Download sequence    Send to blast
MSGSGKKRSS KWDLRDNPDF SPDDGKQLRS GWSSAGDKLK HFSGGRGSNK DNIMNKDYRV  60
LDSTMEWDED ESYDHKMSPG LDAWKHKRHN SQSPKNGWSR SVSRSSRSRS PPHGFRWDSG  120
VNDRSRMRAG GSTQPCRDFA AGKCRRGSHC HFLHDNQNHE DGWEDKYRED GAPRYSAPRE  180
GRDYSLKSGR SDEACINFPK GRCRMGASCK FVHHNNSDGH SKVSVDGLTR EREIDRRHRD  240
SSFEQGSGHG PNRGDTLCKF FANESCRNGK YCRFSHDRQA CRSHNRRLRD DRWASNPGGD  300
YHMLDRPKLS DSVSPNRRPR GDRWGSDGNK ADADKVWDSP ERNDTVAVSD TAKLVEDKSE  360
NVVAAEQGFT PLAMRDGWGH SLDKSRVHSK QPFSSDKKEA DSWIAGNAAN MHGSQSVGTD  420
IWLGDDAKMS PDWDYRVRSS SCIEEKHEQN KHGITQGFMY LATSEHDRIQ IAPGQDFNQN  480
AESFNPLHSS SCQVVGQTQV AAPILPSQGG IVDGMLKQEV STEKKYTTEP NIMDAGLLQV  540
SSRDPPPTEN VVGKEQLAQL TNLSASLAHI LGTGQQLPQL YAALNSHDAK GTSSLAKAEV  600
LAMPLSNTLI RPDPAVGLLK QYDPMCDSVE PKSAVASSGV TPAIPPCKKV AEDVVEISSQ  660
SNTARQNCGN SSKSAGSEEL VKSDPLILLQ PGQNIGVNKD DNKEVLPEER QKSKDDPKNT  720
KESGPLENME QTDGPDEAKK TKGMKGSRAF KFALVEFVKE LLKPTWKDGQ ITKDDYKTIV  780
KKVVDKVTGS MQGANIPQTQ EKIDHYLSFS KPKLNKLVQA YVEKVQKA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.222000.0cotyledon| hypocotyl| leaf| meristem| somatic embryo| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G152200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006581758.10.0zinc finger CCCH domain-containing protein 38 isoform X1
RefseqXP_006581759.10.0zinc finger CCCH domain-containing protein 38 isoform X1
RefseqXP_014631946.10.0zinc finger CCCH domain-containing protein 38 isoform X1
RefseqXP_014631947.10.0zinc finger CCCH domain-containing protein 38 isoform X1
RefseqXP_028236410.10.0zinc finger CCCH domain-containing protein 38-like isoform X1
RefseqXP_028236411.10.0zinc finger CCCH domain-containing protein 38-like isoform X1
RefseqXP_028236413.10.0zinc finger CCCH domain-containing protein 38-like isoform X1
RefseqXP_028236414.10.0zinc finger CCCH domain-containing protein 38-like isoform X1
TrEMBLA0A445KA340.0A0A445KA34_GLYSO; Zinc finger CCCH domain-containing protein 38 isoform A
TrEMBLI1KBI10.0I1KBI1_SOYBN; Uncharacterized protein
STRINGGLYMA06G15720.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40993252
Representative plantOGRP1027869
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.13e-11C3H family protein