PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G100000.1.p
Common NameGLYMA_06G100000, LOC100789380
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 335aa    MW: 37282.1 Da    PI: 6.6831
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G100000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.42.7e-13133184155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Glyma.06G100000.1.p 133 QRMTHIAVERNRRKQMNEYLAVLRSLMPSS---YVQRGDQASIIGGAINFVKELE 184
                          79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.16E-13131188No hitNo description
Gene3DG3DSA:4.10.280.101.3E-13132188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.16E-17132197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.288132183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-10133184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-10138189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.681259334IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MALEAVVFPQ DPFAYGCNKD YLYSLVGATP NYGNFQAAEE EKVLLGIINN NIEHNLYANW  60
DSSSTSMLQN VKEQQWDSHS SPEACTVEQS VTTPSFPPPP PPSSSVEATV TTTSRRKRRR  120
TKSAKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYVQRGDQA SIIGGAINFV  180
KELEQLLQSM EGQKRTNQGK ENVVGLNGTS RTTTTTPFAE FFAFPQYTTR GTTMAQNNQE  240
QKQWAVADIE VTMVDNHANL KVLSKKQPGQ IMKIVVGLQS LKLSILHLNV STLDDMVLYS  300
VSVKVEDGCL LNTVDEIAAA VNQLLRTIQE VTFS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115119RKRRR
2115120RKRRRT
3133144RMTHIAVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.256370.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G100000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0979370.0BT097937.1 Soybean clone JCVI-FLGm-22B18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003526566.10.0transcription factor bHLH94
SwissprotQ9C7T43e-94BH096_ARATH; Transcription factor bHLH96
TrEMBLI1K9U40.0I1K9U4_SOYBN; Uncharacterized protein
STRINGGLYMA06G10470.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-80bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]