PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 332aa MW: 37790.6 Da PI: 4.3228

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.06G092000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.7	1.5e-11	170	213	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr ++Pk + K++ +iL +++Y+k+L Glyma.06G092000.1.p 170 LMAERRRRKRLNDRLSMLRAIVPKiS------KMDRTSILGDTIDYMKEL 213 589*******************66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.237	164	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-14	167	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.8E-11	170	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.7E-9	170	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.2E-14	171	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.18E-5	171	217	No hit	No description
CDD	cd04873	0.00287	257	298	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MEFYDQDFLE ELMTLRRETW DTNPSTEENQ FFSNAWSFDC FDQNSLPYLP NSSCGQEVPQ 60 SYNNDYPFSE IYGSLLDESS PQIMDSYYGT LDITPLNTPP FLGQEDYPLS MMEEEDPGFL 120 GEELKNLELQ TTCKVEKTQS SEMPAFNMGT GLERKNNRSK KLQGQPSKNL MAERRRRKRL 180 NDRLSMLRAI VPKISKMDRT SILGDTIDYM KELLEKINNL QQVEVDSSMA GIFKDVKPNE 240 IIVRNSPKFE VERSVDTRVE ICCAGKPGLL LSTVNTVEAL GLEIQQCVIS CFNDFTMQAS 300 CSEELEQRAM LSSEDIKQAL FRSAGYGGRC L*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	172	179	ERRRRKRL

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Broadly expressed. {ECO:0000269\|PubMed:17088607}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.06G092000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT096992	0.0	BT096992.1 Soybean clone JCVI-FLGm-21O6 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003526525.1	0.0	transcription factor bHLH93
Refseq	XP_028235606.1	0.0	transcription factor bHLH93-like
Swissprot	Q9LSL1	1e-81	BH093_ARATH; Transcription factor bHLH93
TrEMBL	A0A445K730	0.0	A0A445K730_GLYSO; Transcription factor bHLH93
TrEMBL	I1K9L1	0.0	I1K9L1_SOYBN; Uncharacterized protein
STRING	GLYMA06G09670.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1186	34	103
Representative plant	OGRP2636	11	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	8e-84	beta HLH protein 93

Link Out ? help Back to Top
Phytozome	Glyma.06G092000.1.p
Entrez Gene	100812578

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]