PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G083400.3.p
Common NameGLYMA_06G083400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CPP
Protein Properties Length: 522aa    MW: 57717.8 Da    PI: 8.2041
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G083400.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR46.66.5e-15127165241
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                          ++k+CnCk+s+Clk+YCeCfaag +C+  C+C +C+N+ +
  Glyma.06G083400.3.p 127 KQKQCNCKNSRCLKLYCECFAAGIYCDG-CNCVNCHNNVD 165
                          89**************************.********986 PP
2TCR51.12.6e-16209248140
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Glyma.06G083400.3.p 209 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 248
                          589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.6E-18126166IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.753127249IPR005172CRC domain
PfamPF036385.9E-12128163IPR005172CRC domain
SMARTSM011148.4E-20209250IPR033467Tesmin/TSO1-like CXC domain
PfamPF036389.7E-13212247IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MEQSETASDL APRKLVRQLN FAAVYGDPSH LKLPPPSPSP SPPPPSHSPL RLQLDLLPPG  60
QRPWLCSEPQ EQQAWLYSPR LKLVSPVRRI PHPVKKLPVK VLQVAKPKSP RSQPQCNVEL  120
KDTTPKKQKQ CNCKNSRCLK LYCECFAAGI YCDGCNCVNC HNNVDNEAAR QEAVGITLER  180
NPNAFRPKIA SSPLERRDSK ECEIQVIGKH NKGCHCKKSG CLKKYCECFQ ANILCSENCK  240
CMDCKNFEGS DERRAIFHKD YNLVHIKQAA NATISRVAGS SGYGTHLTPK KRKIHEMFPG  300
KSAMDQTDNI TAQYQQEIDP MASSPSFLSD SFVSDPSNTR ISASSRSTYR SVLADFFQPQ  360
NVKNLCSLFV VLSQVAAKTN AEMIGKVDQQ TKTGNFEASV ASSSKSLQET RDVHQLVCDD  420
HVNKDEADAV DIANYNRPLS PETLALMCDE QDDMIFGNSS ANGVACNSTL QNMIQKSSNS  480
DGCTDVCREQ ERLILTKFLD VLRGLVTHGS IKVICLGPIL C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-301192582132Protein lin-54 homolog
5fd3_B4e-301192582132Protein lin-54 homolog
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269|PubMed:18057042}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G083400.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025984635.10.0protein tesmin/TSO1-like CXC 5 isoform X2
SwissprotQ9SZD11e-121TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A0R0JDR80.0A0A0R0JDR8_SOYBN; Uncharacterized protein
STRINGGLYMA06G08774.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-104Tesmin/TSO1-like CXC domain-containing protein