PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G082300.1.p
Common NameGLYMA_06G082300, LOC100811335
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 1000aa    MW: 110471 Da    PI: 4.8362
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G082300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.48e-193783148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g WT+eEde+l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
  Glyma.06G082300.1.p 37 KGQWTPEEDEILRKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 83
                         799****************************9.************986 PP

2Myb_DNA-binding65.78.4e-2189135148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g+W++eEde+++d+v+++G++ W+tIa++++ gR +kqc++rw+++l
  Glyma.06G082300.1.p  89 KGPWSKEEDEIIIDLVNRYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 135
                          79******************************.*************97 PP

3Myb_DNA-binding54.72.4e-17141183145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          + +WT+eE++ l++a++ +G++ W+  a+ ++ gRt++++k++w+
  Glyma.06G082300.1.p 141 KEAWTQEEELALIRAHQIYGNR-WAELAKLLP-GRTDNSIKNHWN 183
                          579*******************.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.4713283IPR017930Myb domain
SuperFamilySSF466896.75E-163389IPR009057Homeodomain-like
SMARTSM007171.0E-153685IPR001005SANT/Myb domain
PfamPF002492.0E-163783IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-2539100IPR009057Homeodomain-like
CDDcd001671.96E-144083No hitNo description
PROSITE profilePS5129432.42684139IPR017930Myb domain
SuperFamilySSF466892.13E-3186182IPR009057Homeodomain-like
SMARTSM007174.3E-1988137IPR001005SANT/Myb domain
PfamPF002497.6E-1989135IPR001005SANT/Myb domain
CDDcd001679.10E-1791135No hitNo description
Gene3DG3DSA:1.10.10.601.8E-27101143IPR009057Homeodomain-like
SMARTSM007172.8E-17140188IPR001005SANT/Myb domain
PROSITE profilePS5129421.387140190IPR017930Myb domain
PfamPF002491.5E-15141184IPR001005SANT/Myb domain
CDDcd001671.88E-13143183No hitNo description
Gene3DG3DSA:1.10.10.602.1E-22144190IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 1000 aa     Download sequence    Send to blast
MEGDQTIPAA SDVVIEGVQK IRALNGRTTG PTRRSTKGQW TPEEDEILRK AVQRFKGKNW  60
KKIAECFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDEII IDLVNRYGPK KWSTIAQHLP  120
GRIGKQCRER WHNHLNPTIN KEAWTQEEEL ALIRAHQIYG NRWAELAKLL PGRTDNSIKN  180
HWNSSVKKKL DSYLASGLLT QLQNVPLVGN PNQPIASISS RLQQSGDDNG PRGTEGEEVS  240
QCSQESANAG HFSSARDMSS VVLQTGEEYR PSEEPSQASC SEPYYVSLDE VTASLQDMAG  300
QEICTSQFIE QKYSHKPRNS SNGDCQLDLL DLTNISSLDF GQESSQMQND CVAPSENHNI  360
VNVPFQTSMG LGVATTMGPT SVKPEHMLMS DDECCRILFS EAISDECFSS GDYSKGVNMV  420
NLSGCTSFLC QSSLPSVPSV VSSAGDRLTY TYTAEANQLV GSEDQQFVSR TQDNIIYAND  480
LSSSPCIHRI DSTEMQEPSD VVKGDSKLVP VNSFGCGSDA KQTSYPTDEK PNMLTEQEDK  540
GALCYEPPRF PSLDIPFLSC DLIQSGGDMQ QEFSPLGIRQ FMMSSMNMDL TPFRLWDSPS  600
RDDSPDALLK SAAKTFTGTP SILKKRNRDL LSPLSDKRID KRLEIEMTST LIKNFSRLDV  660
MFDDNETQGA DLLPASSMQK RDSGTSVEGD KQNCGQAVKV EQVEDKNKSA ILNDKKSEDD  720
SGDNNSLDKI KQQPLDVDSE IKNDASAAAE IVQQPSGILV EHDRNDLLLY SPDQVNLKSE  780
KKISLSARTK KNPCSRINSP SAWVKEHERL SVAVTCVQSI SSSGPGENSG DHIGNDGGLE  840
TCNIFGGTPF RKSIESPSAW KSPWFMNTFL SSPRIDTEIT IEDFGYFMSP GDRSYDAIGL  900
MKQISEQTAA QYASAQEILG NETPKALPKD ASRNDRDEDQ EHIDAHNQHG NHCQLASSAL  960
VERRVLDFSE CGTPVRGDSS KSSAKNFSSP SSYLLKGCR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-69371906159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-69371906159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G082300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003527826.10.0transcription factor MYB3R-1
RefseqXP_028235458.10.0transcription factor MYB3R-1-like
RefseqXP_028235459.10.0transcription factor MYB3R-1-like
TrEMBLA0A445K6J20.0A0A445K6J2_GLYSO; Transcription factor MYB3R-4 isoform A
TrEMBLI1K9970.0I1K997_SOYBN; Uncharacterized protein
STRINGGLYMA06G08660.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37273362
Representative plantOGRP9448613
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein