PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.06G040800.1.p | ||||||||
Common Name | GLYMA_06G040800, LOC100788158 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 259aa MW: 29397.3 Da PI: 7.1796 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26 | 1.6e-08 | 162 | 202 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++L +A++Y+k L Glyma.06G040800.1.p 162 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 202 699*****************87.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.434 | 153 | 202 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.5E-14 | 154 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.27E-14 | 157 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-13 | 159 | 208 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.6E-6 | 163 | 202 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.20E-6 | 176 | 207 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MEQQHMDMMT MMMLQHLPEF SEPYTHTMEG FHPPSEEFCG NNNNNIRNTM QLADLIDNNN 60 PLSPIPWSSS YSFTHLPAST TEISFSNNSH PTTPIMLQEH EQQYEGANAN PYGGEKRNSM 120 AAMREMIFRM AAMQPIHIDP ESVKAPKRRN VKISKDPQSV AARHRRERIS ERIRILQRLV 180 PGGTKMDTAS MLDEAIHYVK FLKTQVQSLE RASSANNNIR PLNAAGQIGF PVASTPYFPL 240 PSKPYQAPNM DNMHDTYH* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.10615 | 1e-179 | cotyledon| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.06G040800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ336955 | 0.0 | DQ336955.1 Glycine max cultivar Williams 82 clone BAC gmw1-52d3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003527719.1 | 0.0 | transcription factor HEC2 | ||||
Refseq | XP_028234244.1 | 0.0 | transcription factor HEC2-like | ||||
TrEMBL | A0A445K4H7 | 0.0 | A0A445K4H7_GLYSO; Transcription factor HEC2 | ||||
TrEMBL | Q00M67 | 0.0 | Q00M67_SOYBN; Bhelix-loop-helix transcription factor | ||||
STRING | GLYMA06G04380.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF651 | 34 | 141 | Representative plant | OGRP761 | 15 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50330.1 | 2e-41 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.06G040800.1.p |
Entrez Gene | 100788158 |
Publications ? help Back to Top | |||
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