PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G012200.1.p
Common NameGLYMA_06G012200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 391aa    MW: 43071.1 Da    PI: 7.4163
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G012200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.72.3e-09195242455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Glyma.06G012200.1.p 195 SHSLAERVRREKISERMKYLQDLVPGC----NKVTGKAGMLDEIINYVQSLQ 242
                          8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.19E-17189259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.70E-10189246No hitNo description
PROSITE profilePS5088815.624191241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-17191258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-6195242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-10197247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MLHCANTSGN LAVAGDMTVL ERQRARMKWQ EEQGYFSGNS FNGVFSSSSL HVHDSIMVAA  60
DSGCALAEVV AQAQARSTNS SSISRTFSCP PALVEPESES KPKPKPTDSS VGKDGFKKRK  120
PDKPHHPKVV AENDNKDKRI KFGSDDGESK ITKSNTTNTN TNNNKETCAE TSNSKASEKP  180
DYIHVRARRG QATDSHSLAE RVRREKISER MKYLQDLVPG CNKVTGKAGM LDEIINYVQS  240
LQRQVEFLSM KLAAVNPRLD LSIDDLFDKD VFSTCATNFP NIGISSTSDI SNPAYLQFNS  300
PQQIFSYDGL DPSDMGLRRT ISAPVSMPET YLQSSCFTQM LPSSTWEGDF QNLCNFDFDQ  360
ARATSFPSQL LSGNYKSVPC RTTFFLSLLS *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.517610.0cotyledon| hypocotyl| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G012200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0982350.0BT098235.1 Soybean clone JCVI-FLGm-26H15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003527205.10.0transcription factor bHLH63
RefseqXP_028234560.10.0transcription factor bHLH63-like
TrEMBLA0A445K3440.0A0A445K344_GLYSO; Transcription factor bHLH63 isoform A
TrEMBLI1K7690.0I1K769_SOYBN; Uncharacterized protein
STRINGGLYMA06G01430.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36183463
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.16e-58cryptochrome-interacting basic-helix-loop-helix 1