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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.06G008800.1.p |
Common Name | GLYMA_06G008800, LOC100780311 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
GATA |
Protein Properties |
Length: 295aa MW: 32887.9 Da PI: 7.1159 |
Description |
GATA family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.06G008800.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GATA | 57 | 2.6e-18 | 211 | 244 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
Cs+C++ kTp+WR gp g ktLCnaCG++y++ +
Glyma.06G008800.1.p 211 CSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGR 244
*******************************987 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0007623 | Biological Process | circadian rhythm |
GO:0009416 | Biological Process | response to light stimulus |
GO:0030154 | Biological Process | cell differentiation |
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter |
GO:0005634 | Cellular Component | nucleus |
GO:0005667 | Cellular Component | transcription factor complex |
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding |
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding |
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding |
GO:0003682 | Molecular Function | chromatin binding |
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
Protein Sequence Length: 295 aa
Download sequence Send
to blast |
MEVAVAKALK PSLRSEFIVQ KMHCEDIFSL NANTVAVGED FSVDDLFDFS NGSLHNEHQQ 60 ECDEEKQSLS ASSQSQDRGE DDSNSNSTGV SYDSLFSTEL AVPAGDLEDL EWVSHFVDDS 120 LPELSLLYPV RSEEANRFVE PEPSVKKTPR FPWEMKITSK ARSVRNRKPN TRVWSLGSTL 180 LSLPSSPPAK KQKKRAEAQV QPVGVQIQRR CSHCQVQKTP QWRTGPLGAK TLCNACGVRY 240 KSGRLFSEYR PACSPTFCSD IHSNSHRKVL EIRKRKEVAE PDTGLAQTQM VPTC*
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Expression -- UniGene
? help Back to Top |
UniGene ID |
E-value |
Expressed in |
Gma.55187 | 0.0 | cotyledon| flower| leaf| meristem| pod| root| stem |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC235287 | 1e-114 | AC235287.1 Glycine max strain Williams 82 clone GM_WBb0053I09, complete sequence. |