PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB

Protein Properties

Length: 229aa MW: 25823.4 Da PI: 9.0219

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.06G003800.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.4	1.2e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+ +++ +G g+W++ ++ g+ R++k+c++rw +yl Glyma.06G003800.2.p 14 KGAWTKEEDHRLISYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	31.2	5.2e-10	67	104	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++ eEd+l+++++ +lG++ ++ gRt++++k++w+++ Glyma.06G003800.2.p 67 RGNFSLEEDQLIIKLHSLLGNK--------LP-GRTDNEIKNYWNTH 104 89****************99.........************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-23	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	22.387	9	65	IPR017930	Myb domain
SuperFamily	SSF46689	2.66E-23	13	101	IPR009057	Homeodomain-like
SMART	SM00717	8.1E-12	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	3.0E-15	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.56E-9	16	61	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.8E-17	65	109	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.486	66	109	IPR017930	Myb domain
SMART	SM00717	1.3E-7	66	107	IPR001005	SANT/Myb domain
Pfam	PF00249	3.6E-8	67	104	IPR001005	SANT/Myb domain
CDD	cd00167	2.23E-7	69	105	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MGRSPCCEKA HTNKGAWTKE EDHRLISYIR AHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF SLEEDQLIIK LHSLLGNKLP GRTDNEIKNY WNTHIRRKLL SRGIDPATHR 120 PLNDSSHQEP AAVSAPPKHQ ESFHHERCPD LNLELTISPP HHPQPDHPHL KTLVTNSNLC 180 FPCSLGLHNS KDCSCALHTS TANATATGYD FLALKTTVVL DYRTLHMK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	6e-24	13	109	26	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.36026	0.0	flower\| leaf\| stem\| vegetative bud

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269\|PubMed:1840903}.
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269\|PubMed:1840903}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.06G003800.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ555057	1e-142	FJ555057.1 Glycine max transcription factor MYB047 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001235637.1	1e-155	MYB transcription factor MYB48
Refseq	XP_028234492.1	1e-155	myb-related protein 308-like
Swissprot	P81393	4e-99	MYB08_ANTMA; Myb-related protein 308
TrEMBL	A0A0R0JF18	1e-168	A0A0R0JF18_SOYBN; Uncharacterized protein
STRING	GLYMA06G00630.1	1e-154	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	1e-93	myb domain protein 4

Link Out ? help Back to Top
Phytozome	Glyma.06G003800.2.p

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]