PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G178200.1.p
Common NameGLYMA_05G178200, LOC100798875
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CAMTA
Protein Properties Length: 1123aa    MW: 126989 Da    PI: 6.108
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G178200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1177.41.8e-55211363118
                 CG-1   3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 
                          + ++rwl++ ei+aiL n++k+ +++e+++ p+sgsl+L++rk++ryfrkDG++w+kkkdgktvrE+he+LK g+v+vl+cyYah+een+
  Glyma.05G178200.1.p  21 EAQHRWLRPAEICAILSNHKKFLIASEPAHMPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVREAHERLKAGSVDVLHCYYAHGEENE 110
                          669*************************************************************************************** PP

                 CG-1  93 tfqrrcywlLeeelekivlvhylevk 118
                          +f+rr+ywlLeeel++ivlvhy++vk
  Glyma.05G178200.1.p 111 NFRRRTYWLLEEELSHIVLVHYRHVK 136
                          ***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143778.79215141IPR005559CG-1 DNA-binding domain
SMARTSM010761.3E-7418136IPR005559CG-1 DNA-binding domain
PfamPF038591.7E-4821134IPR005559CG-1 DNA-binding domain
PfamPF018335.4E-5539615IPR002909IPT domain
SuperFamilySSF812967.0E-16539624IPR014756Immunoglobulin E-set
Gene3DG3DSA:2.60.40.103.5E-4540613IPR013783Immunoglobulin-like fold
CDDcd002041.62E-15721833No hitNo description
Gene3DG3DSA:1.25.40.209.3E-19721837IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029719.359724845IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484038.24E-19725836IPR020683Ankyrin repeat-containing domain
PfamPF127963.7E-8746841IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0034774803IPR002110Ankyrin repeat
PROSITE profilePS500889.671774806IPR002110Ankyrin repeat
SMARTSM00248110813842IPR002110Ankyrin repeat
SuperFamilySSF525408.76E-7938996IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM0001515946968IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.492948976IPR000048IQ motif, EF-hand binding site
PfamPF006120.053948967IPR000048IQ motif, EF-hand binding site
SMARTSM000150.16969991IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.584970994IPR000048IQ motif, EF-hand binding site
PfamPF006120.0034972989IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001077Molecular Functiontranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1123 aa     Download sequence    Send to blast
MAEARHYVPP SQLDIKQIIL EAQHRWLRPA EICAILSNHK KFLIASEPAH MPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVREAHER LKAGSVDVLH CYYAHGEENE NFRRRTYWLL  120
EEELSHIVLV HYRHVKGTKA NFTCAKENEE TLPYAQQTDK IMPKTEMETS LSSTLHPHSY  180
QVPSQTMDRS MNSSQASEYE EAESAFNNHA SSEFYSFLEL ERPVEKITPQ PADSYSPRPL  240
TRKSVPNMNC IIESGTDDQE KSPVIPGVNY ISLTQDNKIK DIHNFGLTYE SPKPLGFSSW  300
EGILKNNAGS QHVPFQPLFP GTQPDNMGIN SKFSQGHEIM VPYLTTSIAK QHENGSLIQA  360
EGNWQAYDVD SLRMSSWPID SAYSGSSCDI TCSNREQEVN DVDLQKSLEQ CLLHPYKQNK  420
VFMQNDPQEK LLNEKEKIKS DLEANRILDG IEDTYFTFKR TLLDGSPAEE GLKKLDSFNQ  480
WMSKELADVE ESNKPSTSGG YWDTVESENE VGNTTIPSQG HLDTYVLDPS VSHDQLFSII  540
DYSPSWAFEG SEIKVIISGR FLRSQHEAEQ GKWSCMFGEV EVPAEIIAKG VLCCHTPPHK  600
AGRVPFYVTC SNRLACSEVR EFDFQVNYTP EVNTTGENRG STFDTFSIRF GELLSLGHAF  660
PQNSDSISVS EKSQLRSKIN SLLREEEDDW DKLLKLTQEE DFSPENLQEQ LLQNLLKDKL  720
HAWLLQKITE EGKGPNILDE GGQGVLHFAS ALGYDWALEP TIVAGVNVNF RDVNGWTALH  780
WAAFCGRERT VAFLISLGAA PGALTDPCPE HPSGRTPADL ASANGHKGIA GYLAESSLSA  840
HLTTLDLNRD AGENSGAKVV QRVQNIAQVN DLDGLSYELS LKDSLAAVRN ATHAAARIHQ  900
VFRMQSFQRK QLKEYDDDKL GLSDERALSL VKMNMKSHKS GPRDEPVHAA AVRIQNKFRS  960
WKGRREFLMI RQRIVKIQAH VRGHQVRKSC GKIIWSVGIL EKVILRWRRK GSGLRGFKPE  1020
ANSEGTMIQD VSSTDDDYDV LKEGRKQTEQ RLQKALARVK SMVQYPEARD QYHRLLNVVT  1080
EIQENQVKHE SSYNNSEEPR EFGDLNDLEA LLDEDIFMPT AT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4hb5_A8e-1272586220157Engineered Protein
4hb5_B8e-1272586220157Engineered Protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.422140.0leaf| root| seed coat
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G178200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006580273.10.0calmodulin-binding transcription activator 3-like isoform X1
TrEMBLK7KQY00.0K7KQY0_SOYBN; Uncharacterized protein
STRINGGLYMA05G31190.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82842735
Representative plantOGRP5621565
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1