PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.05G144500.1.p | ||||||||
Common Name | GLYMA_05G144500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ARR-B | ||||||||
Protein Properties | Length: 636aa MW: 71711.9 Da PI: 5.3077 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 76.9 | 2.7e-24 | 253 | 306 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++W+ +LH++Fv+av+q+ G +k Pk+il+lm+v+ Lt+e+v+SHLQkYRl Glyma.05G144500.1.p 253 KARVVWSVDLHQKFVKAVNQI-GFDKVGPKKILDLMNVPWLTRENVASHLQKYRL 306 68*******************.9*******************************8 PP | |||||||
2 | Response_reg | 81.9 | 2.1e-27 | 71 | 179 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 vl+vdD+p+ +++l+++l+k y ev+++ ++eal++l+e++ +D+++ D++mp+mdG++ll++ e +lp+i+++ ge + + + Glyma.05G144500.1.p 71 VLVVDDDPTWLRILEKMLKKCLY-EVTTCCLATEALKKLRERKdaYDIVISDVNMPDMDGFKLLEQVGLEM-DLPVIMMSVDGETSRVMK 158 89*********************.***************888889**********************6644.8***************** PP HHHTTESEEEESS--HHHHHH CS Response_reg 89 alkaGakdflsKpfdpeelvk 109 ++ Ga d+l Kp+ ++el++ Glyma.05G144500.1.p 159 GVQHGACDYLLKPIRMKELRN 179 ******************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 4.55E-35 | 68 | 193 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 9.3E-44 | 68 | 205 | No hit | No description |
SMART | SM00448 | 5.0E-32 | 69 | 181 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 42.886 | 70 | 185 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.3E-24 | 71 | 180 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 5.64E-30 | 72 | 185 | No hit | No description |
SuperFamily | SSF46689 | 3.76E-17 | 251 | 310 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-27 | 252 | 311 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.9E-21 | 253 | 306 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.0E-7 | 255 | 305 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 636 aa Download sequence Send to blast |
MLFSFLCLYS LLLKTTSLFL VQYYSFQHKD WKTITCATGT VNIRLVSLTN NMDNGCFSSP 60 RHDAFPAGLR VLVVDDDPTW LRILEKMLKK CLYEVTTCCL ATEALKKLRE RKDAYDIVIS 120 DVNMPDMDGF KLLEQVGLEM DLPVIMMSVD GETSRVMKGV QHGACDYLLK PIRMKELRNI 180 WQHVFRKRMH EARDFESHEG FDFEGIHLMR NGSDHSDDGN LFAVEEITSI KKRKDADNKH 240 DDKEFGDHSP MKKARVVWSV DLHQKFVKAV NQIGFDKVGP KKILDLMNVP WLTRENVASH 300 LQKYRLYLSR LQKENDQKSS SSGIKHSDSP SKDPGSFSIL DTANKQQNDV AIDSFSYSDG 360 SLLLQMDATS HEGNLKGIVS EPTTEKRRGS TGDIPDPKIQ KSSQKSLNQP FTSVESSEAN 420 HAVFDCTIPT QYSWSEFPKG PLKEEQKTLV QLEDSLSQLP LHGNGTQHHI HVDQSQSIAS 480 INSNPSITEE EVAAKLETKP LYAGYESDYV SPVSSIGSAV EVFPSQSKSL MVNDQSSEPT 540 FTSNLSLKAQ GFNRDCISDL DFYQRNLLLG GEVASAPLEE DLNFFLLQTE CYNMNFGLQN 600 IDMSEYYDPR LIAEVPSHFY DSADYSSVDQ SLFIA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 4e-17 | 249 | 311 | 1 | 63 | ARR10-B |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00010 | PBM | Transfer from AT1G67710 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.05G144500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003524159.1 | 0.0 | two-component response regulator ARR11 isoform X1 | ||||
Refseq | XP_028232650.1 | 0.0 | two-component response regulator ARR11-like isoform X1 | ||||
TrEMBL | K7KQ93 | 0.0 | K7KQ93_SOYBN; Two-component response regulator | ||||
STRING | GLYMA05G27670.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3999 | 33 | 60 | Representative plant | OGRP292 | 17 | 120 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67710.1 | 1e-119 | response regulator 11 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.05G144500.1.p |