PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G110600.1.p
Common NameGLYMA_05G110600, LOC100798011
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 362aa    MW: 40347.2 Da    PI: 7.2726
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G110600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.7e-13189236355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          + h + Er+RR+++ ++f  L  ++P +     kK++Ka++Le A++Y+k+Lq
  Glyma.05G110600.1.p 189 QDHVISERKRREKLSQRFIALSAIIPGL-----KKMDKATVLEDAIKYVKQLQ 236
                          56999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.535186235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-10189236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-17190246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-16190246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.10E-13191240No hitNo description
SMARTSM003537.3E-15192241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MMQISSTMYM PEFGMEDPTL FHQYPMDNSV LFQLEDLDFE SFSASPKNSS SPKRFNSEST  60
QNSSLTQNPE QYSVTPPRPT KQNKTVSTTW SAYNTHDMMA PKASSSSSSK IISFENSNAS  120
SVTSQQLYNV DAASKVKKPK SETGYGENLD FAAAAASQSV YDNNSFLDHY DTREKKAAAS  180
LTRNPTQAQD HVISERKRRE KLSQRFIALS AIIPGLKKMD KATVLEDAIK YVKQLQERVK  240
TLEEQAVDKT VESAVFVKRS VVFAGDDSSD NDENSDQSLP KIEARISGKE VLIRIHSDKH  300
SGGAAAILRE LEKHHLTVQS SSFLPFGNNT FDITIVAKMN MDYCFTAKDL IRSLSRCLRQ  360
L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194199ERKRRE
2195200RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G110600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003525884.20.0transcription factor bHLH18
RefseqXP_028232247.10.0transcription factor bHLH18-like
TrEMBLA0A0B2SRQ20.0A0A0B2SRQ2_GLYSO; Transcription factor bHLH25
TrEMBLK7KPK50.0K7KPK5_SOYBN; Uncharacterized protein
STRINGGLYMA05G23291.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Representative plantOGRP6561573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.17e-51bHLH family protein