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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.05G091200.1.p |
| Common Name | GLYMA_05G091200, LOC100794096 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
AP2 |
| Protein Properties |
Length: 534aa MW: 59057.7 Da PI: 6.4678 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.05G091200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 53.3 | 6.9e-17 | 178 | 227 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g
Glyma.05G091200.1.p 178 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 227
78*******************......55************************997 PP
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| 2 | AP2 | 43.7 | 6.8e-14 | 270 | 320 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k +g
Glyma.05G091200.1.p 270 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 320
89********.7******5553..2.26**********99**********99776 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 534 aa
Download sequence Send
to blast |
MWDLNDSPDQ RINKDEESEE GCSSLNKTSF DGDDDNNNNK GKRVGSVSNS SSSAVVIGDG 60
SEEEYEEEEE DEEGVGVGGG RSMKKRSSKI FGFSVTQNEE ESMDSDHPPV TRQFFPVEDA 120
DVAVATGGGG TGVSSTFPRA HWVGVKFCQS ETLGTGKSSV EVSQPMKKSR RGPRSRSSQY 180
RGVTFYRRTG RWESHIWDCG KQVYLGGFDT AHAAARAYDR AAIKFRGVEA DINFNIEDYE 240
DDLKQMSNLT KEEFVHVLRR QSTGFPRGSS KYRGVTLHKC GRWEARMGQF LGKKYVYLGL 300
FDTEIEAARA YDKAAIKCNG KEAVTNFDPS IYDNELNSES TGNAPDHNLD LSLGNSTSNP 360
GNDQALGNQA PNAVTHDQHM PSESNWRNGG IKPKLVNILP KPCYRSNNKD THGRDVHGES 420
ETLRMLSQTH LHSPAFNEMQ QRYGPYRSPG GESQMLQNFA HIHPPNFHFP RSSIGGRIGS 480
DLSLSVADQQ QWQTGPSRYL ATAAASSSFQ QEIRPSSQGW LQKNGLHSLM RPS*
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| Expression -- UniGene
? help Back to Top |
| UniGene ID |
E-value |
Expressed in |
| Gma.12508 | 0.0 | cotyledon| flower| leaf| root| somatic embryo |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: It is detectable at low levels throughout the shoot apex and at enhanced levels in the inflorescence meristem, young floral buds and throughout the early stages of flower development and organogenesis. During floral organ differentiation it becomes spatially restricted to specific organ, tissue and cell types within the flower. |
| Uniprot | TISSUE SPECIFICITY: Sepals, petals, stamens, carpels, developing ovules, inflorescence stem, leaf and stem. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcriptional activator that promotes early floral meristem identity (PubMed:7919989). Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:1675158). Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower, by spatially controlling the expression domains of multiple floral organ identity genes (PubMed:1675158, PubMed:23034631). Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS (PubMed:1675158). Directly represses AGAMOUS by recruiting the transcriptional corepressor TOPLESS and the histone deacetylase HDA19 (PubMed:23034631). It is also required during seed development (PubMed:1675158). {ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:23034631, ECO:0000269|PubMed:7919989}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Negatively regulated by the C class floral homeotic protein AGAMOUS in stamens and carpels. MicroRNA 172 (miRNA172) negatively regulates APETALA2 at the translational level and may modulate its expression pattern. Seems not to be influenced by jasmonate and Alternaria brassicicola. {ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:12893888, ECO:0000269|PubMed:14555699}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EU857402 | 0.0 | EU857402.1 Glycine max apetal2-like protein (AP2) gene, complete cds. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Thamilarasan SK,Park JI,Jung HJ,Nou IS
Genome-wide analysis of the distribution of AP2/ERF transcription factors reveals duplication and CBFs genes elucidate their potential function in Brassica oleracea.
BMC Genomics, 2014. 15: p. 422
[PMID:24888752] - Zhang GB,Yi HY,Gong JM
The Arabidopsis ethylene/jasmonic acid-NRT signaling module coordinates nitrate reallocation and the trade-off between growth and environmental adaptation.
Plant Cell, 2014. 26(10): p. 3984-98
[PMID:25326291] - Ranocha P,Francoz E,Burlat V,Dunand C
Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
Plant Signal Behav, 2014. 9(11): p. e977734
[PMID:25531128] - Djemal R,Khoudi H
Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
Protoplasma, 2015. 252(6): p. 1461-73
[PMID:25687296] - Kazan K
Diverse roles of jasmonates and ethylene in abiotic stress tolerance.
Trends Plant Sci., 2015. 20(4): p. 219-29
[PMID:25731753] - Prunet N, et al.
SQUINT promotes stem cell homeostasis and floral meristem termination in Arabidopsis through APETALA2 and CLAVATA signalling.
J. Exp. Bot., 2015. 66(21): p. 6905-16
[PMID:26269626] - Xie W, et al.
Exploring potential new floral organ morphogenesis genes of Arabidopsis thaliana using systems biology approach.
Front Plant Sci, 2015. 6: p. 829
[PMID:26528302] - Zumajo-Cardona C,Pabón-Mora N
Evolution of the APETALA2 Gene Lineage in Seed Plants.
Mol. Biol. Evol., 2016. 33(7): p. 1818-32
[PMID:27030733] - Zhao Y, et al.
An alternative strategy for targeted gene replacement in plants using a dual-sgRNA/Cas9 design.
Sci Rep, 2016. 6: p. 23890
[PMID:27033976] - Gao R,Liu P,Irwanto N,Loh R,Wong SM
Upregulation of LINC-AP2 is negatively correlated with AP2 gene expression with Turnip crinkle virus infection in Arabidopsis thaliana.
Plant Cell Rep., 2016. 35(11): p. 2257-2267
[PMID:27473526] - Huang Z, et al.
APETALA2 antagonizes the transcriptional activity of AGAMOUS in regulating floral stem cells in Arabidopsis thaliana.
New Phytol., 2017. 215(3): p. 1197-1209
[PMID:27604611] - Dory M, et al.
Kinase-Associated Phosphoisoform Assay: a novel candidate-based method to detect specific kinase-substrate phosphorylation interactions in vivo.
BMC Plant Biol., 2016. 16(1): p. 204
[PMID:27655033] - Wang P, et al.
Expansion and Functional Divergence of AP2 Group Genes in Spermatophytes Determined by Molecular Evolution and Arabidopsis Mutant Analysis.
Front Plant Sci, 2016. 7: p. 1383
[PMID:27703459] - Sharma P, et al.
Promoter Trapping and Deletion Analysis Show Arabidopsis thaliana APETALA2 Gene Promoter Is Bidirectional and Functions as a Pollen- and Ovule-Specific Promoter in the Reverse Orientation.
Appl. Biochem. Biotechnol., 2017. 182(4): p. 1591-1604
[PMID:28130768] - Kihira M, et al.
Arabidopsis thaliana FLO2 is Involved in Efficiency of Photoassimilate Translocation, Which is Associated with Leaf Growth and Aging, Yield of Seeds and Seed Quality.
Plant Cell Physiol., 2017. 58(3): p. 440-450
[PMID:28158741] - Balanzà V, et al.
Genetic control of meristem arrest and life span in Arabidopsis by a FRUITFULL-APETALA2 pathway.
Nat Commun, 2018. 9(1): p. 565
[PMID:29422669] - Dotto M,Gómez MS,Soto MS,Casati P
UV-B radiation delays flowering time through changes in the PRC2 complex activity and miR156 levels in Arabidopsis thaliana.
Plant Cell Environ., 2018. 41(6): p. 1394-1406
[PMID:29447428] - Song C,Lee J,Kim T,Hong JC,Lim CO
VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis.
Planta, 2018. 247(6): p. 1439-1448
[PMID:29536220]
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