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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.05G070200.3.p | ||||||||
Common Name | GLYMA_05G070200, LOC100820385 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | G2-like | ||||||||
Protein Properties | Length: 470aa MW: 52760.9 Da PI: 7.6622 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 87.6 | 1.2e-27 | 231 | 284 | 2 | 56 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 +++WtpeLH+ Fv+aveqL G+++A+P++ilelmkv+gLt+++v+SHLQkYR++ Glyma.05G070200.3.p 231 IKVDWTPELHKTFVKAVEQL-GIDQAIPSRILELMKVEGLTRHNVASHLQKYRMH 284 5899****************.********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50110 | 11.731 | 1 | 30 | IPR001789 | Signal transduction response regulator, receiver domain |
Gene3D | G3DSA:3.40.50.2300 | 5.6E-5 | 2 | 37 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-27 | 227 | 287 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.562 | 227 | 286 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.29E-18 | 229 | 287 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-24 | 230 | 285 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.0E-7 | 233 | 282 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 470 aa Download sequence Send to blast |
MMKCIALGAV EFLRKPLSED KLRNIWQHVV HKAFNARASI LSESLKPVKE SVVSMLQLQT 60 DDEQHESRVS RDIEKVSRFV DNDHELSSGN DKYPAPSTPQ LRQGTRLLDD GDCQEQTNCS 120 TGKESGEHEG ESKSVETTCG NLNAESTPQQ RKSEITLVRE EVESTPQQRK SEITLVKEEV 180 DIVDASKGES VASPHTQKRK VLSNTDRNTK ALIKVGVHSD SCEIRGNQKK IKVDWTPELH 240 KTFVKAVEQL GIDQAIPSRI LELMKVEGLT RHNVASHLQK YRMHKRQILP KEERKWLNLR 300 ERSYCVKRPI MAFPPYHSNH TLPLPPVYPM WGQSGSPTAG MQIWGSPGYP FWHTTAENWH 360 WKPFPGMHAD AWGCPVLPLP PPQTPGFPYS QNMPSLLNAD AVDHTFTMPQ SSFEHYPAEE 420 VVDKVVKEAI SKPWLPLPLG LKPPSPDSVL AELSRQGISN IPPKGSNSC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 7e-16 | 235 | 284 | 6 | 55 | Transcription factor LUX |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.8000 | 0.0 | root| seed coat| somatic embryo |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.05G070200.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-106 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006579672.1 | 0.0 | two-component response regulator-like APRR2 isoform X1 | ||||
Refseq | XP_028231878.1 | 0.0 | two-component response regulator-like APRR2 isoform X1 | ||||
Swissprot | Q6LA43 | 1e-92 | APRR2_ARATH; Two-component response regulator-like APRR2 | ||||
TrEMBL | A0A445KK76 | 0.0 | A0A445KK76_GLYSO; Two-component response regulator-like APRR2 isoform A | ||||
TrEMBL | K7KNA7 | 0.0 | K7KNA7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA05G06070.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18020.6 | 2e-82 | ARR-B family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.05G070200.3.p |
Entrez Gene | 100820385 |
Publications ? help Back to Top | |||
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