PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G070200.3.p
Common NameGLYMA_05G070200, LOC100820385
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 470aa    MW: 52760.9 Da    PI: 7.6622
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G070200.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.61.2e-27231284256
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                           +++WtpeLH+ Fv+aveqL G+++A+P++ilelmkv+gLt+++v+SHLQkYR++
  Glyma.05G070200.3.p 231 IKVDWTPELHKTFVKAVEQL-GIDQAIPSRILELMKVEGLTRHNVASHLQKYRMH 284
                          5899****************.********************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011011.731130IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23005.6E-5237No hitNo description
Gene3DG3DSA:1.10.10.603.2E-27227287IPR009057Homeodomain-like
PROSITE profilePS5129415.562227286IPR017930Myb domain
SuperFamilySSF466895.29E-18229287IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-24230285IPR006447Myb domain, plants
PfamPF002491.0E-7233282IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MMKCIALGAV EFLRKPLSED KLRNIWQHVV HKAFNARASI LSESLKPVKE SVVSMLQLQT  60
DDEQHESRVS RDIEKVSRFV DNDHELSSGN DKYPAPSTPQ LRQGTRLLDD GDCQEQTNCS  120
TGKESGEHEG ESKSVETTCG NLNAESTPQQ RKSEITLVRE EVESTPQQRK SEITLVKEEV  180
DIVDASKGES VASPHTQKRK VLSNTDRNTK ALIKVGVHSD SCEIRGNQKK IKVDWTPELH  240
KTFVKAVEQL GIDQAIPSRI LELMKVEGLT RHNVASHLQK YRMHKRQILP KEERKWLNLR  300
ERSYCVKRPI MAFPPYHSNH TLPLPPVYPM WGQSGSPTAG MQIWGSPGYP FWHTTAENWH  360
WKPFPGMHAD AWGCPVLPLP PPQTPGFPYS QNMPSLLNAD AVDHTFTMPQ SSFEHYPAEE  420
VVDKVVKEAI SKPWLPLPLG LKPPSPDSVL AELSRQGISN IPPKGSNSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A7e-16235284655Transcription factor LUX
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.80000.0root| seed coat| somatic embryo
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G070200.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-106AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006579672.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_028231878.10.0two-component response regulator-like APRR2 isoform X1
SwissprotQ6LA431e-92APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A445KK760.0A0A445KK76_GLYSO; Two-component response regulator-like APRR2 isoform A
TrEMBLK7KNA70.0K7KNA7_SOYBN; Uncharacterized protein
STRINGGLYMA05G06070.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.62e-82ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]