PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G044300.1.p
Common NameGLYMA_05G044300, LOC100786894
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 491aa    MW: 52982.2 Da    PI: 4.7497
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G044300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.62.8e-10147169426
                          ---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                          e C f+++tG Ck+G +CkF+H+
  Glyma.05G044300.1.p 147 EDCAFYMKTGNCKFGFNCKFNHP 169
                          89********************8 PP
2zf-CCCH28.23.2e-09193215325
                          S---SGGGGTS--TTTTT-SS-S CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                          + +C++++r+G Ck+G +Ck++H
  Glyma.05G044300.1.p 193 MTECKYYQRSGGCKFGKSCKYNH 215
                          679******************** PP
3zf-CCCH421.6e-13239264126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          +++++C++++rtG Ck+G++CkF+H+
  Glyma.05G044300.1.p 239 PGERECPYYMRTGSCKFGANCKFNHP 264
                          5789*********************9 PP
4zf-CCCH29.31.4e-09377403127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +++++C+ff++tG Ck+ ++CkF+H++
  Glyma.05G044300.1.p 377 PGEPECSFFLKTGDCKFKSNCKFHHPK 403
                          5799*********************96 PP
5zf-CCCH35.61.5e-11424448226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          +++ C++++r+G+Ck+G+ CkF H+
  Glyma.05G044300.1.p 424 DQSVCSHYSRYGICKFGPACKFDHP 448
                          5789********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.01E-5142171IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.089143171IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-4143170IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-8147169IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001149168IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-5190217IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.845190218IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-7192215IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.1E-5193220IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-4196217IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.089238266IPR000571Zinc finger, CCCH-type
SMARTSM003566.4E-7238265IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-11240264IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-6241265IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-5244263IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.164376404IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-4376403IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-7378403IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5381405IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-6420448IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.577422450IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-4422449IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-9424448IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-4427448IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MEGSESDSVS LSISNGEEPQ LGRPSSPAAP PEPSDLNHAA EEETLSGELQ SKLDLKDVDE  60
SEEKVSDFND GGGVCDEETG KGDGDSKGWE TNSWNEEVGV DVDVDGDGDG DGDDDVDGDV  120
DGDDEVEKKE GRNSGGTHHY PLRPEAEDCA FYMKTGNCKF GFNCKFNHPI KRKSQAVKEK  180
AGEREETTER SGMTECKYYQ RSGGCKFGKS CKYNHTRGKI STAPAPLLEL NFLGLPIRPG  240
ERECPYYMRT GSCKFGANCK FNHPDPTAVG GGGGNPPSGY GNGGSISLQG VSQTSVPSWS  300
SPRTLNEASP FVPMMLSPTQ GVSTQSSDWN GYQASVYLPE RSIHPPSTFV MNNPAIDTNV  360
YMHHQKQMPV DEFPERPGEP ECSFFLKTGD CKFKSNCKFH HPKNRVTRLP PCNLSDKGLP  420
LRPDQSVCSH YSRYGICKFG PACKFDHPIN LQPVMIPGLE QQSYSNSASA GVAGIGGSTG  480
VTDATIQQSV *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.380880.0cotyledon| epicotyl| pod| root| somatic embryo| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G044300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003525622.10.0zinc finger CCCH domain-containing protein 43 isoform X1
RefseqXP_028231590.10.0zinc finger CCCH domain-containing protein 43-like isoform X1
SwissprotQ9STM41e-139C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A445KJ890.0A0A445KJ89_GLYSO; Zinc finger CCCH domain-containing protein 43 isoform A
TrEMBLI1K0730.0I1K073_SOYBN; Uncharacterized protein
STRINGGLYMA05G02920.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41563361
Representative plantOGRP9141714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-134C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]