PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.05G037800.1.p

Common Name

GLYMA_05G037800, LOC100815061

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Dof

Protein Properties

Length: 331aa MW: 36322.6 Da PI: 6.8257

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.05G037800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.3	9.6e-40	53	113	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprC+st+tkfCyynnyslsqPryfCk+CrryWt+GG+lrn+PvGgg+rknkk+s Glyma.05G037800.1.p 53 QEQALKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTQGGTLRNIPVGGGCRKNKKVS 113 5799******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-27	51	111	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-33	55	111	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.068	57	111	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	59	95	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MGFSSLHVCM DSSDHWMQGT IHEECGVDNS SSPSGEMLPC SRPMTESRLR PPQEQALKCP 60 RCESTHTKFC YYNNYSLSQP RYFCKTCRRY WTQGGTLRNI PVGGGCRKNK KVSTKKHNDQ 120 HQPAVNQNQP HPGPSYLHNH KDLQLPYLDV QFPHLNNLLG TNAGALQGNP SFMESKYNMG 180 MLENPRPIDF MESRLDGMSM IRGSTRSFEL LENSDMSVGG GVGFGDVSGY NGLPLNYQGL 240 SSSAFGGMSL DGSINNVGTY IMDSCQRLML PYDGGDNTLN GSIDVKPNPK LLSLEWQDQG 300 CSDAEKLSLG YLNGSGSWTA YGSSTANPLV *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.50326	1e-106	meristem\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.05G037800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU028331	0.0	EU028331.1 Glycine max clone BAC gmw1-89M01 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003525503.1	0.0	dof zinc finger protein DOF5.6
Refseq	XP_028231515.1	0.0	dof zinc finger protein DOF5.6-like
TrEMBL	A0A445KIV2	0.0	A0A445KIV2_GLYSO; Dof zinc finger protein DOF5.6
TrEMBL	K7KMQ7	0.0	K7KMQ7_SOYBN; Uncharacterized protein
STRING	GLYMA05G02220.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5092	34	56
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62940.1	8e-49	Dof family protein

Link Out ? help Back to Top
Phytozome	Glyma.05G037800.1.p
Entrez Gene	100815061