PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G033400.2.p
Common NameGLYMA_05G033400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family E2F/DP
Protein Properties Length: 356aa    MW: 39635.2 Da    PI: 8.5784
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G033400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP70.81.6e-221681171
              E2F_TDP  1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                         rk+ksL+ll+++fl+l+ + +   + l+++a +L    v  +rRRiYDi+NVLe+++l+++k+kn++ w+g
  Glyma.05G033400.2.p 16 RKQKSLGLLCTNFLSLYDRGSVHLIGLDDAAIRL---GV--ERRRIYDIVNVLESIGLLSRKAKNQYIWRG 81
                         79*****************999************...**..****************************98 PP
2E2F_TDP76.82.1e-24152232171
              E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                          r+eksL lltq+f+kl+ +s+ + ++l+e+ak L+ +      +++k+RR+YDi+NVL+++nliek     ++k+++rw g
  Glyma.05G033400.2.p 152 RREKSLALLTQNFVKLFVCSNVELISLDEAAKLLLGDahntsVMRTKVRRLYDIANVLSSMNLIEKthttdTRKPAFRWLG 232
                          689**************************************999**************************99*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.7E-241382IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.22E-151579IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.7E-271681IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.4E-191781IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.8E-23149233IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.5E-31152232IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.1E-19154232IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467855.83E-14154233IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MASSDPIPSR HCTYNRKQKS LGLLCTNFLS LYDRGSVHLI GLDDAAIRLG VERRRIYDIV  60
NVLESIGLLS RKAKNQYIWR GFVAIPHTLQ ELKEEGLKDN SNFLRGSGND NDKVSDDEDD  120
EETLSNPATG SQSDKLNPNS STLTKSLKNE NRREKSLALL TQNFVKLFVC SNVELISLDE  180
AAKLLLGDAH NTSVMRTKVR RLYDIANVLS SMNLIEKTHT TDTRKPAFRW LGSEGKTWNE  240
TLHKSNLNES RKRAFGSDIT NISFERNNVE LFTNGDSNPN PKKPRMEYGS GLGQADENNL  300
KQGTKQASKN YQFGPFAPAC VPKVGASENN NLKQVHGWDS LATANSPQYQ NEAEG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A4e-37152243228Transcription factor E2F8
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.205880.0flower| somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in a cell cycle-dependent manner. Not detected during early S phase. Expressed at both the G1/S and S/G2 transitions, with a peak during G2. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:18787127}.
UniprotTISSUE SPECIFICITY: Expressed exclusively in mitotically dividing cells. Highly expressed in young leaves and mature flowers. Lower expression in young stalk and in young and mature flowers. {ECO:0000269|PubMed:11867638, ECO:0000269|PubMed:15649366}.
Functional Description ? help Back to Top
Source Description
UniProtInhibitor of E2F-dependent activation of gene expression. Binds specifically the E2 recognition site without interacting with DP proteins and prevents transcription activation by E2F/DP heterodimers. Controls the timing of endocycle onset and inhibits endoreduplication. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11867638, ECO:0000269|PubMed:15649366, ECO:0000269|PubMed:18787127}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G033400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0952310.0BT095231.1 Soybean clone JCVI-FLGm-19A6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003525157.10.0E2F transcription factor-like E2FE
RefseqXP_014630922.10.0E2F transcription factor-like E2FE
RefseqXP_014630923.10.0E2F transcription factor-like E2FE
RefseqXP_014630924.10.0E2F transcription factor-like E2FE
RefseqXP_028231468.10.0E2F transcription factor-like E2FE
SwissprotQ8LSZ41e-108E2FE_ARATH; E2F transcription factor-like E2FE
TrEMBLK7KMM90.0K7KMM9_SOYBN; Uncharacterized protein
STRINGGLYMA05G01760.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.11e-111DP-E2F-like 1
Publications ? help Back to Top
  1. Chandran D, et al.
    Atypical E2F transcriptional repressor DEL1 acts at the intersection of plant growth and immunity by controlling the hormone salicylic acid.
    Cell Host Microbe, 2014. 15(4): p. 506-13
    [PMID:24721578]
  2. Wang Z, et al.
    Del1 Knockout Mice Developed More Severe Osteoarthritis Associated with Increased Susceptibility of Chondrocytes to Apoptosis.
    PLoS ONE, 2016. 11(8): p. e0160684
    [PMID:27505251]
  3. Heyman J,Polyn S,Eekhout T,De Veylder L
    Tissue-Specific Control of the Endocycle by the Anaphase Promoting Complex/Cyclosome Inhibitors UVI4 and DEL1.
    Plant Physiol., 2017. 175(1): p. 303-313
    [PMID:28698355]