PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G214200.1.p
Common NameGLYMA_04G214200, LOC100783856
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 837aa    MW: 92530.3 Da    PI: 8.2207
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G214200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.59.4e-08141163326
                          S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                          t +Cr+fa+ G C++G+ C+F H+
  Glyma.04G214200.1.p 141 TQPCRDFAA-GKCRRGSHCHFLHD 163
                          789******.*************6 PP
2zf-CCCH19.41.9e-06265286426
                          ---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                           lC+ffa  G+C+ G  C+F+H+
  Glyma.04G214200.1.p 265 TLCKFFAN-GHCRNGKYCRFSHD 286
                          59**8888.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0012138164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.61138165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-6141164IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-5141163IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.38197224IPR000571Zinc finger, CCCH-type
SMARTSM003560.46198223IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.281261288IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-5261287IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6263286IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-4266291IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 837 aa     Download sequence    Send to blast
MSGSGKKRSS KWDLRDDPDF SPDDSQQLRS GWSSAGDKLK PGMGFSSKEP FSGGRGSNKD  60
DIMNKDYRVL DATMEWDEDG SYNNEMSPGL EGWKHNKRHS QSPKNGWSRS VRSSRSRSPP  120
HGFRWDSGVN DRNRMRAGGS TQPCRDFAAG KCRRGSHCHF LHDNQNHEDS WEDKYREDGA  180
PRYSAPHEGR DYSLKSGRSN EACINFPKGR CRMGASCKFV HHNNSDGHSK VSVDELARER  240
EIDRRHRDSS FEQGGGHGPN RSGDTLCKFF ANGHCRNGKY CRFSHDRQAC RSPNRRSRDD  300
RWASNPGGDY HMLDRPKLSD SVSPNRRPRD DRWGSDGNRA DADKVWDSPK RNDTVAVSDT  360
AKLVEDKSEN VVAAEQGFTP LATRDGWGHS LDKSRVHGEQ PFSSDKKEAD SWITGNNAAN  420
MHGSQSIGTD IWLGDDAKMS PDWDYRVRSS SCIEEKHEQN KHGITQGFMY LDTSEHDRIQ  480
IAPGQGFNQN AVSFNSLHSS SCQAVGQSQV AVPILPSKGG IVDGMLKQEV STEKKYTAEP  540
NIMDAGLSQV SSRNPPPTAN VVGKEQLAQL TNLSASLAHI LGTGQQLPQL YAALNSHDAK  600
DISSLAKTEV PAMPVSNTFI RPDPTVGLLK QYDPMCDSVE PKGAVASGVP PAIPPSQKVA  660
DVVEIPSQSN TGRQNCGDSS KAAGSEELVK SDPLIQLQPG QNTGVNKDNN KEMLPEETLK  720
SKDDPKSTKE SGPFENMEQT DGPDEAKKIK GMKGNRAFKF ALVEFVKELL KPTWKDGQIT  780
KEDYKTIVKK VVDKVTGSMQ GVNIPQTQEK IDHYLSFSKP KLNKLVQAYV EKVQKA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.387440.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G214200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003523233.20.0zinc finger CCCH domain-containing protein 38 isoform X1
RefseqXP_006578792.10.0zinc finger CCCH domain-containing protein 38 isoform X1
RefseqXP_006578793.10.0zinc finger CCCH domain-containing protein 38 isoform X1
TrEMBLK7KLH60.0K7KLH6_SOYBN; Uncharacterized protein
STRINGGLYMA04G39221.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40993252
Representative plantOGRP1027869
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.15e-13C3H family protein