PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.04G145000.1.p | ||||||||
Common Name | GLYMA_04G145000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NF-YB | ||||||||
Protein Properties | Length: 108aa MW: 12060.4 Da PI: 4.6605 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 39.3 | 1.5e-12 | 1 | 45 | 42 | 86 |
NF-YB 42 fisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 fi +v+se+++ c++e+r+ti+++ +l al+ lGf +y+e++ + Glyma.04G145000.1.p 1 FINLVSSESNEVCNKEERRTIAPEHVLKALGVLGFGEYIEEVYAA 45 89**************************************98654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00808 | 3.3E-7 | 1 | 30 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 6.2E-22 | 1 | 91 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 3.87E-20 | 1 | 94 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 108 aa Download sequence Send to blast |
FINLVSSESN EVCNKEERRT IAPEHVLKAL GVLGFGEYIE EVYAAYEQHK LETMQDSLKG 60 AKWSNRAEMT EEEALAEQQR MFAEARARMN GGAITSKQPD AHQSLES* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 3e-20 | 1 | 86 | 49 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.04G145000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF464906 | 1e-150 | AF464906.1 Glycine max repressor protein (Dr1) mRNA, complete cds. | |||
GenBank | BT089816 | 1e-150 | BT089816.1 Soybean clone JCVI-FLGm-2L20 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025984025.1 | 2e-74 | protein Dr1 homolog | ||||
Refseq | XP_028228844.1 | 3e-74 | protein Dr1 homolog | ||||
Swissprot | P49592 | 3e-53 | NC2B_ARATH; Protein Dr1 homolog | ||||
TrEMBL | A0A0B2Q782 | 6e-73 | A0A0B2Q782_GLYSO; Protein Dr1 like | ||||
TrEMBL | K7MS80 | 4e-73 | K7MS80_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA18G22896.1 | 7e-74 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4766 | 33 | 58 | Representative plant | OGRP3449 | 17 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.2 | 1e-55 | nuclear factor Y, subunit B13 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.04G145000.1.p |
Publications ? help Back to Top | |||
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