PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.04G144700.1.p | ||||||||
Common Name | GLYMA_04G144700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | FAR1 | ||||||||
Protein Properties | Length: 150aa MW: 17296.9 Da PI: 4.4865 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 43.3 | 1.2e-13 | 86 | 149 | 1 | 64 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCka 64 kfY +Y k+ GF +rk++ + +n++i++r+fvC+k+g r++++ +++++ +r+ trt+Cka Glyma.04G144700.1.p 86 KFYIAYTKSHGFGIRKDYVDYD-MNHNIIMRQFVCNKKGLRDKKHLMrDNRKKDHRSLTRTNCKA 149 6*****************9998.7777**************99987646788889*********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.7E-12 | 86 | 149 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MDNSNDEWFV NLEDDNDVNS SDTNSSNGSD AEVDIDVDNE EGVEDVDNEE EAKDVDCIGF 60 KLKNLKDVTT DDITPIEFSC EHNAYKFYIA YTKSHGFGIR KDYVDYDMNH NIIMRQFVCN 120 KKGLRDKKHL MRDNRKKDHR SLTRTNCKA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.04G144700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020209499.1 | 5e-43 | protein FAR1-RELATED SEQUENCE 5-like, partial | ||||
TrEMBL | A0A445L098 | 1e-104 | A0A445L098_GLYSO; Uncharacterized protein | ||||
TrEMBL | K7MS76 | 1e-104 | K7MS76_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA18G22811.1 | 1e-105 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9653 | 6 | 34 | Representative plant | OGRP11434 | 2 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 5e-07 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.04G144700.1.p |