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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.04G111200.5.p |
Common Name | GLYMA_04G111200 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
FAR1 |
Protein Properties |
Length: 177aa MW: 20705 Da PI: 9.918 |
Description |
FAR1 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.04G111200.5.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | FAR1 | 86.5 | 4.1e-27 | 12 | 100 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
fY+eYA+++GF +r+ + ++s+r+g+i r++ C+keg+ + + k + r++ra+tr gCka++++k +k+gkw++tk++++HnH+l+
Glyma.04G111200.5.p 12 FYDEYARRLGFVMRVMSCRRSERDGRILARRLGCNKEGYCVSIRGKFASVRKPRASTREGCKAMIHIKYDKSGKWVITKFVKDHNHPLV 100
9**************************************999999989***************************************96 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009585 | Biological Process | red, far-red light phototransduction |
GO:0010018 | Biological Process | far-red light signaling pathway |
GO:0042753 | Biological Process | positive regulation of circadian rhythm |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 177 aa
Download sequence Send
to blast |
MEFESEDAAK LFYDEYARRL GFVMRVMSCR RSERDGRILA RRLGCNKEGY CVSIRGKFAS 60 VRKPRASTRE GCKAMIHIKY DKSGKWVITK FVKDHNHPLV VSPREARQTM DEKDKKIQEL 120 TAELRLKKRL CATYQEQLTS FMKIVEEHNE KLSAKIHHVV NNLKEFESIE ELLHQT*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help
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Source |
Description |
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT144425 | 1e-164 | BT144425.1 Medicago truncatula clone JCVI-FLMt-6J23 unknown mRNA. |