PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G110100.1.p
Common NameGLYMA_04G110100, LOC102666249
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 322aa    MW: 36579.4 Da    PI: 9.6796
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G110100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.32e-14189235148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g+W+  Ed  l+++v+q+G + W+ Ia+ +   Rt+kqc++rw+++l
  Glyma.04G110100.1.p 189 KGKWSMKEDRDLIELVNQYGLKKWSQIAKLLH-CRTGKQCQERWNNHL 235
                          79******************************.*************97 PP
2Myb_DNA-binding42.41.6e-13241283145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          +++WT  Ed+++++ + + G++ W+ Ia++++ gR ++ +k+rw+
  Glyma.04G110100.1.p 241 KDSWTLKEDKIFIETHIKVGNK-WSEIAKMLP-GRAPNTIKNRWN 283
                          679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.586184239IPR017930Myb domain
SuperFamilySSF466895.24E-28186282IPR009057Homeodomain-like
SMARTSM007171.2E-12188237IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-24190243IPR009057Homeodomain-like
CDDcd001679.02E-13191235No hitNo description
PfamPF139211.9E-16192250No hitNo description
PROSITE profilePS5129416.237240290IPR017930Myb domain
SMARTSM007171.1E-10240288IPR001005SANT/Myb domain
CDDcd001671.20E-8243283No hitNo description
Gene3DG3DSA:1.10.10.601.4E-17244289IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEFDPSFKGP QYLSSLFPRN SYLKPLTQTI FPSQSSIFTP PPPSSVMFHP NNNSHHFQDH  60
IMNVPTNSTP FVMEGPSNPI TTPMYGITTP SLGDGSSLGG FVNVQCHPPM MLAPNNNNKM  120
EALYGQDKGK AISDFSQKTM LCSSEDSSSK SPSPFSLPND WWMSQYHWDT DQKVKVEKDS  180
NIGNDNVIKG KWSMKEDRDL IELVNQYGLK KWSQIAKLLH CRTGKQCQER WNNHLQPNIR  240
KDSWTLKEDK IFIETHIKVG NKWSEIAKML PGRAPNTIKN RWNGSKRRKN DKRQNKNKHG  300
PYDGSVLDAY VKMVTATEET T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-361832911109B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G110100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006576590.20.0transcription factor MYB3R-2
TrEMBLA0A0R0K6Z50.0A0A0R0K6Z5_SOYBN; Uncharacterized protein
STRINGGLYMA03G15930.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF143361018
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.11e-39myb domain protein 119