PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.04G090100.1.p | ||||||||
Common Name | GLYMA_04G090100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 331aa MW: 37774.6 Da PI: 4.2793 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.7 | 1.5e-11 | 168 | 211 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr ++Pk + K++ +iL +++Y+k+L Glyma.04G090100.1.p 168 LMAERRRRKRLNDRLSMLRAIVPKiS------KMDRTSILGDTIDYMKEL 211 589*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.237 | 162 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.79E-15 | 166 | 224 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.7E-9 | 168 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.8E-11 | 168 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.6E-15 | 169 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.37E-5 | 169 | 215 | No hit | No description |
CDD | cd04873 | 0.00419 | 256 | 297 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MEFYDQDFLE ELMTLRRETW DTNPRTEENQ FFDGGSFDCF DQNSLPYLPN SSCGQEVPQT 60 YNNDYPFSEI YGCLLDESSP QIMDSFYSTL DTPLNTPPFL GQEDYPILSM MEEEEQGLLG 120 EELKNLELQT TCKMEPTQSS EMPVFNMGTG LERKNRSKKL QGQPSKNLMA ERRRRKRLND 180 RLSMLRAIVP KISKMDRTSI LGDTIDYMKE LLEKINNLQQ EVEVDSNMAG IFKDVKPNEI 240 LVRNSPKFEV ERSVDTRVEI CCAGKPGLIL STVNTLEALG LEIQQCVISC FNDFTMQASC 300 SEESEQRTML SSEDIKQALF RSAGYGGRCL * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 170 | 177 | ERRRRKRL |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Broadly expressed. {ECO:0000269|PubMed:17088607}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.04G090100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT096992 | 0.0 | BT096992.1 Soybean clone JCVI-FLGm-21O6 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028228327.1 | 0.0 | transcription factor bHLH93-like | ||||
Swissprot | Q9LSL1 | 1e-82 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | A0A445KXT8 | 0.0 | A0A445KXT8_GLYSO; Transcription factor bHLH93 | ||||
TrEMBL | I1JV18 | 0.0 | I1JV18_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA04G09580.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1186 | 34 | 103 | Representative plant | OGRP2636 | 11 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 6e-85 | beta HLH protein 93 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.04G090100.1.p |
Publications ? help Back to Top | |||
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