PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.04G078300.1.p | ||||||||
Common Name | GLYMA_04G078300, LOC780555 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bZIP | ||||||||
Protein Properties | Length: 301aa MW: 33065.6 Da PI: 5.1844 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 43.4 | 7.3e-14 | 128 | 179 | 3 | 54 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 + kr rrk +NR +ArrsR+RK+a++ eLe v++L+ eN +L k+ ++ Glyma.04G078300.1.p 128 DMKRLRRKVSNRDSARRSRRRKQAQLSELELQVEKLKVENATLYKQFTDASQ 179 68*****************************************987665555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.0E-12 | 126 | 190 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.059 | 128 | 191 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.1E-11 | 129 | 174 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 9.19E-10 | 130 | 179 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 8.9E-8 | 130 | 165 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 133 | 148 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 2.44E-6 | 147 | 182 | No hit | No description |
Gene3D | G3DSA:1.20.5.10 | 2.8E-4 | 166 | 200 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0071333 | Biological Process | cellular response to glucose stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MATTTTEFDL DYEFPDLDYD LRYLSLAGID ALTAFQNLLP DAAMTSFSAC GLIDPHCSQN 60 LTPMHSTITA TIDSQSTICA TSNVGSPISA NKPEGRENRT KGATSGSSEP SDEDDEAGAC 120 EQSTNPADMK RLRRKVSNRD SARRSRRRKQ AQLSELELQV EKLKVENATL YKQFTDASQH 180 FREADTNNRV LKSDVEALRA KVKLAEDMVT RSSFTTLNYQ LLQTQQHQMS TPPQLNTTNL 240 RRMAHVSPTI TVHGNDASYN GVTVGEQNSS ALGNLDMTFN NINNGVMNNA MSCGTIWPLD 300 * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 132 | 148 | RRKVSNRDSARRSRRRK |
2 | 142 | 149 | RRSRRRKQ |
3 | 144 | 149 | SRRRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.36043 | 0.0 | hypocotyl| pod| root| seed coat |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Present in silique vasculature and funiculi. In the anthers, restricted to the connective tissue at pre- and post-dehiscence stages and detected in the vascular tissue of the stamen filament. {ECO:0000269|PubMed:18841482}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots, stems, young leaves, and flowers, mostly in vascular tissues (e.g. phloem). {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:18841482}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.04G078300.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by glucose. {ECO:0000269|PubMed:18841482}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT096669 | 0.0 | BT096669.1 Soybean clone JCVI-FLGm-21C7 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001345650.1 | 0.0 | bZIP transcription factor 61 | ||||
Refseq | XP_028228162.1 | 0.0 | basic leucine zipper 9-like isoform X1 | ||||
Swissprot | Q9FUD3 | 3e-59 | BZIP9_ARATH; Basic leucine zipper 9 | ||||
TrEMBL | A0A0R0KB07 | 0.0 | A0A0R0KB07_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A445KY36 | 0.0 | A0A445KY36_GLYSO; Basic leucine zipper 9 isoform A | ||||
STRING | GLYMA04G08290.3 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4195 | 34 | 58 | Representative plant | OGRP6956 | 10 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24800.1 | 4e-38 | basic leucine zipper 9 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.04G078300.1.p |
Entrez Gene | 780555 |
Publications ? help Back to Top | |||
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