PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

WOX

Protein Properties

Length: 209aa MW: 23564.8 Da PI: 6.9223

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.04G016700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67	2.5e-21	78	138	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps++++++++ +l +++e++V++WFqNrRa+ k+ Glyma.04G016700.1.p 78 RQRWTPTPLQLQILERIFDEgNGTPSKQKIKDITIELgqhgQISETNVYNWFQNRRARSKR 138 89***************99************************************97 PP
2	Wus_type_Homeobox	100.4	1.3e-32	77	140	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+++++G tP+k++i++it eL ++G+i+++NV++WFQNr+aR+++kq Glyma.04G016700.1.p 77 ARQRWTPTPLQLQILERIFDEGNGTPSKQKIKDITIELGQHGQISETNVYNWFQNRRARSKRKQ 140 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	14.657	74	139	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.2E-16	74	140	IPR009057	Homeodomain-like
SMART	SM00389	1.3E-14	76	143	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.95E-18	77	139	IPR009057	Homeodomain-like
CDD	cd00086	6.51E-15	78	140	No hit	No description
Pfam	PF00046	4.1E-19	78	138	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MEAETSNGGG IGGLYVKVMT DDQMELLRQQ ISVYATICEQ LVEMHKAVTT QQDLAGLRLG 60 NLYCDPLMAC SGHKITARQR WTPTPLQLQI LERIFDEGNG TPSKQKIKDI TIELGQHGQI 120 SETNVYNWFQ NRRARSKRKQ LTPAPNVVEP EVESPKEKKT RAEGFQVQPY ENSSPHRIKD 180 MYIQSPDIGF DQLLGKIEVA SCYSSYFL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	139	RRARSKRKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.39313	0.0	root

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.04G016700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	1e-101	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003523048.1	1e-156	WUSCHEL-related homeobox 8
Refseq	XP_028227368.1	1e-156	WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	2e-77	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A445KUA9	1e-155	A0A445KUA9_GLYSO; WUSCHEL-related homeobox 8
TrEMBL	I1JST9	1e-155	I1JST9_SOYBN; Uncharacterized protein
STRING	GLYMA04G01830.1	1e-156	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93
Representative plant	OGRP1873	16	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	3e-72	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	Glyma.04G016700.1.p
Entrez Gene	100820530

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]