PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.03G255000.2.p | ||||||||
Common Name | GLYMA_03G255000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bZIP | ||||||||
Protein Properties | Length: 425aa MW: 45528.4 Da PI: 8.2266 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 70.6 | 2.4e-22 | 279 | 341 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L aeN +Lk+e+++l++ ++k++ e+ Glyma.03G255000.2.p 279 ERELKRERRKQSNRESARRSRLRKQAETEELARKVESLNAENATLKSEINRLTESSEKMRVEN 341 89*********************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 1.5E-37 | 1 | 100 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Pfam | PF16596 | 1.1E-26 | 133 | 262 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 4.8E-17 | 274 | 338 | No hit | No description |
SMART | SM00338 | 2.6E-21 | 279 | 343 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 3.4E-20 | 279 | 341 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.415 | 281 | 344 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.19E-10 | 282 | 337 | No hit | No description |
CDD | cd14702 | 4.38E-21 | 284 | 332 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 286 | 301 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 425 aa Download sequence Send to blast |
MGNSEEEKST KTEKPSSPVT MDQANQTNQT NIHVYPDWAA MQAYYGPRVT MPPYYNSAVA 60 SGHAPHPYMW GPPQPMMPPY GPPYAAIYPH GGVYTHPAVP IGPLTHSQGV PSSPAAGTPL 120 SIETPPKSSG NTDQGLMKKL KEFDGLAMSI GNGHAESAER GGENRLSQSV DTEGSSDGSD 180 GNTSGANQSR RKRSREGTPT TDGEGKTEIQ GSPISKETAA SNKMLGVVPA SVAGTIVGHV 240 VSSGMTTALE LRNPSSVHSK TSAPQPCPVL PAEAWVQNER ELKRERRKQS NRESARRSRL 300 RKQAETEELA RKVESLNAEN ATLKSEINRL TESSEKMRVE NATLRGKLKN AQLGQTQEIT 360 LKIIDSQRAT PVSTENLLSR VNNSGSNDRT VEDENGFCEN KPNSGAKLHQ LLDTSPRADA 420 VAAG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 295 | 301 | RRSRLRK |
2 | 295 | 302 | RRSRLRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.32876 | 0.0 | cotyledon| epicotyl| hypocotyl| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00318 | DAP | Transfer from AT2G46270 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.03G255000.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031145 | 0.0 | KT031145.1 Glycine max clone HN_CCL_210 BZIP transcription factor (Glyma19g44190.2) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001336229.1 | 0.0 | bZIP transcription factor bZIP77 isoform 2 | ||||
Refseq | XP_028226824.1 | 0.0 | common plant regulatory factor 1-like isoform X2 | ||||
Swissprot | Q99089 | 1e-148 | CPRF1_PETCR; Common plant regulatory factor 1 | ||||
TrEMBL | A0A0B2RQK0 | 0.0 | A0A0B2RQK0_GLYSO; Common plant regulatory factor 1 | ||||
TrEMBL | K7KH19 | 0.0 | K7KH19_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA03G41590.5 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46270.1 | 1e-100 | G-box binding factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.03G255000.2.p |
Publications ? help Back to Top | |||
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