PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.03G246000.1.p | ||||||||
Common Name | GLYMA_03G246000, LOC100795995 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | Trihelix | ||||||||
Protein Properties | Length: 624aa MW: 70685.4 Da PI: 6.7938 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 48.8 | 1.8e-15 | 114 | 177 | 2 | 70 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 Wt++evlaL ++r++me+++ + W++vs+k++e gf++s+++Ckek+e+ ++++ +i+++ +k Glyma.03G246000.1.p 114 WTNDEVLALFRIRSSMENWFPEL-----TWDHVSRKLAEVGFKKSAEKCKEKFEDESRYFDNINNNYGK 177 ********************987.....9********************************99987666 PP | |||||||
2 | trihelix | 92.4 | 4.7e-29 | 473 | 566 | 1 | 85 |
trihelix 1 rWtkqevlaLiearr.........emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 rW+++evlaLi++r + +++ ++g+ k+plWe++s+ m+e g++rs+k+Ckekwen+nk+++k+k++ +k++s +s+tcpy Glyma.03G246000.1.p 473 RWPRDEVLALINLRCtslsssnnnNNNNEEKEGNNKGPLWERISQGMSELGYKRSAKRCKEKWENINKYFRKTKDNVNKKRSLNSRTCPY 562 8*************95555554444444444567******************************************************** PP trihelix 82 fdql 85 f+ql Glyma.03G246000.1.p 563 FHQL 566 ***9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.028 | 106 | 165 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 4.2E-10 | 112 | 177 | No hit | No description |
CDD | cd12203 | 3.41E-22 | 472 | 546 | No hit | No description |
Pfam | PF13837 | 1.8E-19 | 472 | 566 | No hit | No description |
PROSITE profile | PS50090 | 6.017 | 473 | 539 | IPR017877 | Myb-like domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 624 aa Download sequence Send to blast |
MFDGAPDQFH QFIAPTRTTL PLHMSFPLHH HASSTPPPNT FLPFDPYNPS SHHHHLPSLQ 60 TNHLLHPLHP PTTIISPTPT HKHEQDKVAP INNNNDVEIQ RDQRQLPDQL TDSWTNDEVL 120 ALFRIRSSME NWFPELTWDH VSRKLAEVGF KKSAEKCKEK FEDESRYFDN INNNYGKNNF 180 RFLISELEEL CQNPDPGGGG DNHNGVEKTH PLGGDNMGHH ALEENKRDIE ITTATKQCDD 240 IVVEKSNISK VRKRKRRDRF EMFKGFCESV VNKMMAQQEE IHNRLLEDML KRDQEKFARE 300 EAWKKQELDR MNKELEIMAQ EQAIAGGRHA TIIEFLKKCA TTTTSLSSPP SQNAKYYKTN 360 GSNLPNCALH PQNPNDPSNE DNNLEPTPSP KMIQNHDQAT LLGAENPSAS DTLLQVPSSS 420 NSSPTPGHNP SSSLNSHNNI IPLDSNSVST YKPTSTTPMA STSENSKDDI GRRWPRDEVL 480 ALINLRCTSL SSSNNNNNNN EEKEGNNKGP LWERISQGMS ELGYKRSAKR CKEKWENINK 540 YFRKTKDNVN KKRSLNSRTC PYFHQLSCLY GQGKIVPQSD EREGKNYLNP TANSGDQVPP 600 DHDQVQADES YQVGSAALVQ YAC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 251 | 256 | RKRKRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.03G246000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 1e-168 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006577279.1 | 0.0 | trihelix transcription factor GTL1 | ||||
Refseq | XP_006577280.1 | 0.0 | trihelix transcription factor GTL1 | ||||
TrEMBL | K7KGV2 | 0.0 | K7KGV2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA03G40611.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5043 | 33 | 55 | Representative plant | OGRP10611 | 5 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28300.1 | 1e-66 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.03G246000.1.p |
Entrez Gene | 100795995 |