PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G173200.1.p
Common NameGLYMA_03G173200, LOC100800759
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 160aa    MW: 17544 Da    PI: 7.834
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G173200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.000824062123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C+ C++ Fs+   L  H  +H
  Glyma.03G173200.1.p 40 FECKTCNRKFSSFQALGGHRASH 62
                         89**********99999998887 PP
2zf-C2H212.30.0005378100123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++Cg  Fs    L  H+r+H
  Glyma.03G173200.1.p  78 HECSICGLGFSLGQALGGHMRKH 100
                          78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.4E-43758IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.6E-113964IPR007087Zinc finger, C2H2
SuperFamilySSF576671.59E-839100No hitNo description
SMARTSM003550.194062IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.3254067IPR007087Zinc finger, C2H2
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.9E-476102IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.6478101IPR007087Zinc finger, C2H2
SMARTSM003550.2578100IPR015880Zinc finger, C2H2-like
PfamPF139122.3E-878100IPR007087Zinc finger, C2H2
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MKRRIENEEA ESTVMEVCMK MFSELAGDIN VQKSPTQEAF ECKTCNRKFS SFQALGGHRA  60
SHKRPKLEDS SVGKPKIHEC SICGLGFSLG QALGGHMRKH TESINGNESF SFSSINQVVV  120
ASSSSSARTM CLDLNLTPLE NDLKFLFEIT TPPKLNISL*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:9132053}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G173200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353152e-33AC235315.1 Glycine max strain Williams 82 clone GM_WBb0074H17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520631.11e-114zinc finger protein ZAT11
SwissprotQ9SLD48e-36ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLI1JPE41e-113I1JPE4_SOYBN; Uncharacterized protein
STRINGGLYMA03G33060.11e-114(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.15e-35C2H2 family protein