PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G144200.2.p
Common NameGLYMA_03G144200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 226aa    MW: 23555.8 Da    PI: 8.9386
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G144200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.92e-093257227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                         kt++C+ f     Ck+Gd+C+FaHg+
  Glyma.03G144200.2.p 32 KTRICNKFNTAEGCKFGDKCHFAHGE 57
                         8***********************96 PP
2zf-CCCH37.54.1e-12192216126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          +kt+lC +fa+ G C +GdrC+FaHg
  Glyma.03G144200.2.p 192 FKTKLCENFAK-GSCTFGDRCHFAHG 216
                          69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.105.0E-142860IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-82961IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-43057IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.613058IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-63257IPR000571Zinc finger, CCCH-type
SuperFamilySSF547916.87E-1687170IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.105.6E-1796166IPR004088K Homology domain, type 1
SMARTSM003222.6E-1297167IPR004087K Homology domain
PROSITE profilePS5008415.15898162IPR004088K Homology domain, type 1
PfamPF000133.5E-12100163IPR004088K Homology domain, type 1
CDDcd001058.07E-16100163No hitNo description
Gene3DG3DSA:4.10.1000.101.6E-16188222IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-9190221IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-8191217IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.765191218IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9192216IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MMNLTPAAPP PPSRNVAALP HVPNGSAPSA VKTRICNKFN TAEGCKFGDK CHFAHGEWEL  60
GKHIAPSFDD HHAMGPPGAG RLAGRMEPPG PAASFGANST AKISVEASLA GAIIGKGGVN  120
SKQICRQTGA KLSIREHESD PNLRNIELEG SFEQIKEASN MVKDLLLTLQ MSAPPKTTPG  180
VPGAPASHGS NFKTKLCENF AKGSCTFGDR CHFAHGASEL RKSGV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.14250.0cotyledon| leaf| pod| root| seed coat| somatic embryo| stem| vegetative bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G144200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0958730.0BT095873.1 Soybean clone JCVI-FLGm-20C9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003521212.11e-164zinc finger CCCH domain-containing protein 31
RefseqXP_028225384.11e-164zinc finger CCCH domain-containing protein 31-like
SwissprotQ69XQ34e-78C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A0R0KP811e-163A0A0R0KP81_SOYBN; Uncharacterized protein
TrEMBLA0A445LC611e-162A0A445LC61_GLYSO; Zinc finger CCCH domain-containing protein 14 isoform A
TrEMBLI1JNK11e-162I1JNK1_SOYBN; Uncharacterized protein
STRINGGLYMA03G30020.11e-163(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.13e-66C3H family protein