PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G144200.1.p
Common NameGLYMA_03G144200, LOC100778470
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 296aa    MW: 31163.4 Da    PI: 9.417
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G144200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.42.9e-09102127227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          kt++C+ f     Ck+Gd+C+FaHg+
  Glyma.03G144200.1.p 102 KTRICNKFNTAEGCKFGDKCHFAHGE 127
                          8***********************96 PP
2zf-CCCH375.9e-12262286126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          +kt+lC +fa+ G C +GdrC+FaHg
  Glyma.03G144200.1.p 262 FKTKLCENFAK-GSCTFGDRCHFAHG 286
                          69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.83461IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.0423462IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.02E-53560IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-73659IPR000571Zinc finger, CCCH-type
PfamPF146081.64259No hitNo description
Gene3DG3DSA:4.10.1000.107.5E-1498130IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-899131IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-4100127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.61100128IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-6102127IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.21E-15157240IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.109.5E-17166236IPR004088K Homology domain, type 1
SMARTSM003222.6E-12167237IPR004087K Homology domain
PROSITE profilePS5008415.158168232IPR004088K Homology domain, type 1
CDDcd001051.89E-15170233No hitNo description
PfamPF000135.8E-12170233IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.102.4E-16258292IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-9260291IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.765261288IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-8261287IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-9262286IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MDIRKRGRHE TGFSLNGGFK RSKQEMESLS TGVGSKSKPC TKFFSTAGCP FGEGCHFLHY  60
VPGGYNAVAH MMNLTPAAPP PPSRNVAALP HVPNGSAPSA VKTRICNKFN TAEGCKFGDK  120
CHFAHGEWEL GKHIAPSFDD HHAMGPPGAG RLAGRMEPPG PAASFGANST AKISVEASLA  180
GAIIGKGGVN SKQICRQTGA KLSIREHESD PNLRNIELEG SFEQIKEASN MVKDLLLTLQ  240
MSAPPKTTPG VPGAPASHGS NFKTKLCENF AKGSCTFGDR CHFAHGASEL RKSGV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.14250.0cotyledon| leaf| pod| root| seed coat| somatic embryo| stem| vegetative bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G144200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0958730.0BT095873.1 Soybean clone JCVI-FLGm-20C9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003521212.10.0zinc finger CCCH domain-containing protein 31
RefseqXP_028225384.10.0zinc finger CCCH domain-containing protein 31-like
SwissprotQ7F8R01e-110C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A445LC610.0A0A445LC61_GLYSO; Zinc finger CCCH domain-containing protein 14 isoform A
TrEMBLI1JNK10.0I1JNK1_SOYBN; Uncharacterized protein
STRINGGLYMA03G30020.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Representative plantOGRP10261756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.13e-92C3H family protein