PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 258aa MW: 27647.1 Da PI: 7.8967

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.03G141200.5.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.9	1.5e-07	216	242	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h+ +Er RR++iN ++ L+el+P + Glyma.03G141200.5.p 216 SHSLAERARREKINARMKLLQELVPGC 242 8************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.57E-8	210	253	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.16E-5	210	244	No hit	No description
PROSITE profile	PS50888	11.274	212	257	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-8	216	253	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.2E-5	216	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MDQAPGGLRG SVHDGATLES IQFNEEIQGI MAPVPAPENA NSFTALLELP PTQAVELLHS 60 PESDSARKPP NCHVSANQKP YLPNSFGSNL TFPSNAALIE RAAKFSVFAG ENSPLPPEEA 120 CLVPAGTGSV SNLDRVKNEP QETDSNPCSS SRLGCISDPA VENNNQRTAK RKEREKKLTV 180 KGSSKKSKSI ADETSGDGEK LPYVHVRVRR GQATDSHSLA ERARREKINA RMKLLQELVP 240 GCDKVGLSSF VVLTLKP*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.34484	0.0	hypocotyl\| leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.03G141200.5.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ617239	0.0	FJ617239.1 Glycine max bHLH transcription factor PTF1 (PTF1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003521193.1	1e-173	transcription factor bHLH48 isoform X2
Refseq	XP_028225345.1	1e-173	transcription factor bHLH48-like isoform X2
Swissprot	Q3EAI1	2e-57	BH060_ARATH; Transcription factor bHLH60
TrEMBL	A0A0R0KP38	0.0	A0A0R0KP38_SOYBN; Uncharacterized protein
STRING	GLYMA03G29710.1	1e-172	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	2e-61	bHLH family protein

Link Out ? help Back to Top
Phytozome	Glyma.03G141200.5.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]