PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G136100.1.p
Common NameGLYMA_03G136100, Glyma03g29240.1, LOC100814117
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 424aa    MW: 47086.6 Da    PI: 9.0566
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G136100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.8e-1761120155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa+a++ a++k++g
  Glyma.03G136100.1.p  61 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 120
                          57*******************766644468557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.4E-1361120IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-1761129IPR016177DNA-binding domain
SMARTSM003809.7E-2662134IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-1562129IPR001471AP2/ERF domain
PROSITE profilePS5103220.12662128IPR001471AP2/ERF domain
PRINTSPR003674.2E-56374IPR001471AP2/ERF domain
PRINTSPR003674.2E-5110130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MASSSSDPGK SAETSEAAAL AVANDQLLLY RGLKKAKKER GCTAKERISK MPPCAAGKRS  60
SIYRGVTRHR WTGRYEAHLW DKSTWNQNQN KKGKQVYLGA YDDEEAAARA YDLAALKYWG  120
PGTLINFPVT DYARDLEEMQ NVSREEYLAS LRRKSSGFSR GLAKYRGLSS RWDPTYGRMS  180
GSDYFNSMHY GAGDDSAAES EYVSGFCLDR KIDLTSHIKW WGSNKSRHSD AGTRLSEEKK  240
LGSAGDVCSE LKQLEQKVQP MEPYQMPQLG RLHNEKKHRS SSLSALSILS QSAAYKSLQE  300
KASKRQENST DNDENENKNT INKLDHGKAV EKPSNHDGGN DRLNIAMGMS GTMSLQRNAY  360
PLTPFLSAPL LTAYNTVDPL VDPVLWTSLV PMLPAGLSRT AEVTKTETSL ETSSTYTMFQ  420
PEE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.394460.0stem
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G136100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310740.0KT031074.1 Glycine max clone HN_CCL_189 AP2-EREBP transcription factor (Glyma03g29240.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006576818.10.0AP2-like ethylene-responsive transcription factor At2g41710 isoform X1
RefseqXP_028225288.10.0AP2-like ethylene-responsive transcription factor At2g41710 isoform X2
SwissprotQ8GWK21e-170AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A445LCH30.0A0A445LCH3_GLYSO; AP2-like ethylene-responsive transcription factor isoform A
TrEMBLI1JNC30.0I1JNC3_SOYBN; AP2-EREBP transcription factor
STRINGGLYMA03G29240.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60072936
Representative plantOGRP91071013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-158AP2 family protein
Publications ? help Back to Top
  1. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]