PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G130400.1.p
Common NameGLYMA_03G130400, LOC100803424
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 242aa    MW: 27588.3 Da    PI: 7.1965
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G130400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.21.5e-1362114155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          ++ +hn+ Er RR+++N+  + Lr+llP a   + kK+s  +++ ++++YI +Lq
  Glyma.03G130400.1.p  62 KKLSHNASERDRRKKVNHLVSSLRSLLPVA--DQTKKMSIPTTVSRVIKYIPELQ 114
                          6789*************************6..48888***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.2461113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.51E-1162118No hitNo description
PfamPF000107.2E-1162114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-1562132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-1262105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-1067119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.40.50.1502.0E-4106220IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MVALFSPPVF STKGWLLEED PLSYDVSSEY SFPYQFYSPQ TQIELEIERS TSPSPEDPAM  60
VKKLSHNASE RDRRKKVNHL VSSLRSLLPV ADQTKKMSIP TTVSRVIKYI PELQQQVEAL  120
SKKKEDLLCR ISRQLQGDAV NKDSQRRISH HNSDFVVSTS RLNDCEAVVH ISSYEAHKAP  180
LSEILQCLEN NGLLLLNASS SETFGGRVFY NLHFQVEKTQ RLESEILTEK LLSIYEKQRI  240
F*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.354900.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G130400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311010.0KT031101.1 Glycine max clone HN_CCL_45 bHLH transcription factor (Glyma03g28630.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520500.11e-178transcription factor ORG2
RefseqXP_028225227.11e-178transcription factor ORG2-like
TrEMBLA0A0B2RA031e-176A0A0B2RA03_GLYSO; Transcription factor ORG2
TrEMBLK7KEQ91e-176K7KEQ9_SOYBN; Uncharacterized protein
STRINGGLYMA03G28611.11e-177(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24023379
Representative plantOGRP28261129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.19e-49bHLH family protein