PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G123400.1.p
Common NameGLYMA_03G123400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 323aa    MW: 35159.9 Da    PI: 6.9775
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G123400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.61.9e-30111164155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  Glyma.03G123400.1.p 111 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 164
                          59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF819958.63E-54288No hitNo description
SuperFamilySSF466893.23E-20108168IPR009057Homeodomain-like
PROSITE profilePS5129411.059108167IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-30110169IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-24112164IPR006447Myb domain, plants
PfamPF002491.3E-7114163IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MREEDSNWFS RWEEEFPSPE ELMPLSQTLI TPDLAMAFDI RNPHTTNTAQ QQHHQHQQQP  60
QQQQQPSNPS SLPNPLQQQQ QQQQPTSAEF ADSGELGSGT AGEEPARTLK RPRLVWTPQL  120
HKRFVDAVAH LGIKNAVPKT IMQLMSVDGL TRENVASHLQ KYRLYLKRMQ GISAAGPGGP  180
GGGASGAVAD PATDHLFASS PVPAHFLHPA ARPNSDHFLP FVPALHPHQQ QQQMAAAAQY  240
HRQVGHFGSP PNGHFENPFM SRPNLQRMGG GGGGGPVHNN HHPVSGYVED MESANAASGG  300
GNKRGLQLVE TNGGVSDWHG WL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A1e-31111167157Transcription factor LUX
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.389340.0cotyledon| seed coat
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves, stems, petioles, filaments, stigma, pedicels, sepals, anthers, petals, and siliques. {ECO:0000269|PubMed:20331973}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G123400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003521111.10.0transcription factor MYBC1
RefseqXP_028225157.10.0transcription factor MYBC1-like
SwissprotO222102e-65MYBC1_ARATH; Transcription factor MYBC1
TrEMBLK7KEM00.0K7KEM0_SOYBN; Uncharacterized protein
STRINGGLYMA03G27890.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85423045
Representative plantOGRP11571753
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.15e-81G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]