PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.03G101600.1.p | ||||||||
Common Name | GLYMA_03G101600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 172aa MW: 19638 Da PI: 9.8422 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.8 | 0.00022 | 17 | 67 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + + r+RR +i+s ++ + +P + k+++ l + L +A YIk+L+ Glyma.03G101600.1.p 17 KTIQRNRRIHIKSLCFKYLSSIPYnDLKPTKDMLYQQDQLDLAATYIKHLK 67 6789********************776666666****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.01E-6 | 13 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.9E-5 | 15 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MIKTNTSTSG SPKLHRKTIQ RNRRIHIKSL CFKYLSSIPY NDLKPTKDML YQQDQLDLAA 60 TYIKHLKERI QKLKGEKEIF NIGSQLPLIE IKDLGLGIGV KLISGLNKNL MLYEVISVLE 120 EDGAEVVTVN FSTVADKFFT RVMLRIGVEP TRVYQRLPEL IAPLESWEYI S* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.38755 | 4e-78 | leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.03G101600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT095983 | 9e-76 | BT095983.1 Soybean clone JCVI-FLGm-15G16 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003525498.1 | 5e-92 | transcription factor bHLH162 | ||||
Refseq | XP_028231504.1 | 5e-92 | transcription factor bHLH162-like | ||||
TrEMBL | A0A0R0KGX9 | 1e-122 | A0A0R0KGX9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA05G02110.2 | 2e-91 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6849 | 21 | 41 | Representative plant | OGRP1345 | 11 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10586.1 | 2e-17 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.03G101600.1.p |