PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G267500.2.p
Common NameGLYMA_02G267500, LOC100812856
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 416aa    MW: 45759.5 Da    PI: 7.9298
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G267500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.71.1e-094570126
                         --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                         +++++C +++rtG C yG +C+++H+
  Glyma.02G267500.2.p 45 PGEPECLYYLRTGMCGYGTNCRYHHP 70
                         5789*********************8 PP
2zf-CCCH37.63.8e-1289113327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          ++ C +f++tGtCkyG++Ck++H++
  Glyma.02G267500.2.p  89 QPDCEYFLKTGTCKYGSTCKYHHPK 113
                          789********************96 PP
3zf-CCCH38.12.5e-12136158527
                          --SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                           C++++rtG Ck+G  CkF+H++
  Glyma.02G267500.2.p 136 SCPYYMRTGSCKFGVACKFHHPQ 158
                          6********************97 PP
4zf-CCCH40.16.1e-13272297227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++Cr+f+ tGtCkyG+ CkF+H++
  Glyma.02G267500.2.p 272 DQPECRYFMSTGTCKYGSDCKFHHPK 297
                          689*********************96 PP
5zf-CCCH322e-10315339226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          +++ C++++ +G Ck+G++CkF H+
  Glyma.02G267500.2.p 315 GQAVCSYYRIYGMCKFGPTCKFDHP 339
                          7899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.0E-54471IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.454472IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-64670IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-64971IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.47886114IPR000571Zinc finger, CCCH-type
SMARTSM003569.2E-686113IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-1089113IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-691115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-592113IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6130159IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.638131159IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4133158IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-10135158IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.1E-5136159IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-6270297IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.624270298IPR000571Zinc finger, CCCH-type
PfamPF006428.2E-11272297IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-7274299IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-6276297IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5311339IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-6313340IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.544313341IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-7315339IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MPENRQVLRN ADSGDNIEEA IRHLKINDNW DRDAAAQSTQ YPDRPGEPEC LYYLRTGMCG  60
YGTNCRYHHP AHISIGTHYG EELPQRAGQP DCEYFLKTGT CKYGSTCKYH HPKDRRGAAP  120
VSFNTLGLPM RQEEKSCPYY MRTGSCKFGV ACKFHHPQHA SLGAYPLAGS PTPTSTIIPT  180
SGLPYAGGFP AWSAVPRMSY LSGQGLQSYV PPFLSSSQGV IPVQSWNNYM GNMNPAMPNG  240
FLGSNLVYDY MNLGESLFGG QAINSALPNR PDQPECRYFM STGTCKYGSD CKFHHPKERM  300
SQSLINPLGL PVRPGQAVCS YYRIYGMCKF GPTCKFDHPV LTIPQNYGLT SPAMNVLDTP  360
LTRGLSNVQP PETSPSKLSD KKLQHSDAKA ATEDSSKQDD TTLNSFPASA EPLHN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.169800.0flower| leaf| stem| vegetative bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G267500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0976690.0BT097669.1 Soybean clone JCVI-FLGm-22K6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014625593.10.0zinc finger CCCH domain-containing protein 3 isoform X2
RefseqXP_028218164.10.0zinc finger CCCH domain-containing protein 3-like isoform X2
TrEMBLA0A445LUI70.0A0A445LUI7_GLYSO; Zinc finger CCCH domain-containing protein 3 isoform B
TrEMBLI1JII00.0I1JII0_SOYBN; Uncharacterized protein
STRINGGLYMA02G43510.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-116C3H family protein