PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G258300.1.p
Common NameGLYMA_02G258300, LOC100787169
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 295aa    MW: 32659.3 Da    PI: 8.993
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G258300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.2e-13103149354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ++h+++E+rRRdriN  +++Lr+l+P +      K++Ka+ L  +v+++k+L
  Glyma.02G258300.1.p 103 KSHSQAEKRRRDRINAQLATLRKLIPMS-----DKMDKAALLGSVVDHVKDL 149
                          79*************************8.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.275100149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-13102153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.28E-10103152No hitNo description
Gene3DG3DSA:4.10.280.104.9E-15103152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-11103149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.0E-12106155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00229198233No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MKWEIKSSQS KAQQTLEWFV ICVLCYVHME SYYYSGWPLA QCYNSAPNSD QLSPFSVPTT  60
TQQTLPLVAS SSSDHAAASL QFGEFPSWPA PIGAEVRAAS ASKSHSQAEK RRRDRINAQL  120
ATLRKLIPMS DKMDKAALLG SVVDHVKDLK RKAMDVVSKA VTVPTETDEV TIDYHQSQDE  180
SYTKRVNILK ENIIIKASVC CDDRPELFPE LIQVLKGLRL TAVKADIASV GGRIKSILVL  240
CSKDSDEDNN SVCLSTLKQS LKSAVNKIAS LSVATNYPSR SKRQRFFLPS HYVQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.236070.0cotyledon| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G258300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0900460.0BT090046.1 Soybean clone JCVI-FLGm-3B13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003519403.20.0transcription factor bHLH51
RefseqXP_028217210.10.0transcription factor bHLH51-like
TrEMBLA0A445LU790.0A0A445LU79_GLYSO; Transcription factor bHLH51
TrEMBLI1JIA10.0I1JIA1_SOYBN; Uncharacterized protein
STRINGGLYMA02G42570.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57963351
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.11e-48bHLH family protein