PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB

Protein Properties

Length: 313aa MW: 35724.4 Da PI: 7.9734

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.02G254200.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.5	5.6e-07	38	83	3	46
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 WT e+ +++ a + + ++ +W ++a++++ g+t +++ ++ Glyma.02G254200.3.p 38 EWTREDNKKFESALAIYDKDtpdRWFKVAAMIP-GKTVFDVIKQYRE 83 7******************************.**999999875 PP
2	Myb_DNA-binding	42.2	1.9e-13	138	182	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + ++G+g+W+ I+r + ++t+ q+ s+ qky Glyma.02G254200.3.p 138 PWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKY 182 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	9.587	34	89	IPR017884	SANT domain
SMART	SM00717	3.8E-8	35	87	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.96E-11	37	91	IPR009057	Homeodomain-like
CDD	cd00167	7.29E-7	38	84	No hit	No description
Pfam	PF00249	1.1E-5	38	83	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	19.353	131	187	IPR017930	Myb domain
SuperFamily	SSF46689	3.3E-16	133	187	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.7E-17	134	186	IPR006447	Myb domain, plants
SMART	SM00717	5.6E-11	135	185	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.5E-11	135	181	IPR009057	Homeodomain-like
CDD	cd00167	7.56E-9	138	182	No hit	No description
Pfam	PF00249	6.1E-11	138	182	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MIFPRFCTNL KGMELETLYT PCYMPNSNWF VQESLSTEWT REDNKKFESA LAIYDKDTPD 60 RWFKVAAMIP GKTVFDVIKQ YRELEEDVSE IEAGHVPIPG YLASSFTFEL VDNHNYDGCR 120 RRLAPVRGSD QERKKGVPWT EEEHRRFLMG LLKYGKGDWR NISRNFVVTK TPTQVASHAQ 180 KYYIRQKVSG GKDKRRPSIH DMTTVNLTET SASDKNKPPV IAPQQKLNSM SKVQLDWTSS 240 HYNDGSLMVF NPNSDDLFVS SSSDVTSMAL KMQGQDLYEC ALREAYAKVK VPGFSMAPRD 300 FNNEAVFGIH AL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	6e-16	39	101	11	73	RADIALIS
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.17502	0.0	leaf\| root\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269\|PubMed:11937495}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.02G254200.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	1e-159	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006574483.1	0.0	MYB transcription factor MYB83 isoform X1
Swissprot	Q8S9H7	6e-90	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	I1JI55	0.0	I1JI55_SOYBN; Uncharacterized protein
STRING	GLYMA02G42140.3	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38090.1	6e-93	MYB family protein

Link Out ? help Back to Top
Phytozome	Glyma.02G254200.3.p
Entrez Gene	778063

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]