PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB

Protein Properties

Length: 301aa MW: 34315.7 Da PI: 7.1957

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.02G254200.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.6	5.2e-07	26	71	3	46
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 WT e+ +++ a + + ++ +W ++a++++ g+t +++ ++ Glyma.02G254200.2.p 26 EWTREDNKKFESALAIYDKDtpdRWFKVAAMIP-GKTVFDVIKQYRE 71 7******************************.**999999875 PP
2	Myb_DNA-binding	42.3	1.8e-13	126	170	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + ++G+g+W+ I+r + ++t+ q+ s+ qky Glyma.02G254200.2.p 126 PWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKY 170 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	9.587	22	77	IPR017884	SANT domain
SMART	SM00717	3.8E-8	23	75	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.78E-11	25	79	IPR009057	Homeodomain-like
CDD	cd00167	7.34E-7	26	72	No hit	No description
Pfam	PF00249	1.0E-5	26	71	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	19.353	119	175	IPR017930	Myb domain
SuperFamily	SSF46689	3.09E-16	121	175	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.6E-17	122	174	IPR006447	Myb domain, plants
SMART	SM00717	5.6E-11	123	173	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.0E-11	123	169	IPR009057	Homeodomain-like
CDD	cd00167	7.52E-9	126	170	No hit	No description
Pfam	PF00249	5.7E-11	126	170	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MELETLYTPC YMPNSNWFVQ ESLSTEWTRE DNKKFESALA IYDKDTPDRW FKVAAMIPGK 60 TVFDVIKQYR ELEEDVSEIE AGHVPIPGYL ASSFTFELVD NHNYDGCRRR LAPVRGSDQE 120 RKKGVPWTEE EHRRFLMGLL KYGKGDWRNI SRNFVVTKTP TQVASHAQKY YIRQKVSGGK 180 DKRRPSIHDM TTVNLTETSA SDKNKPPVIA PQQKLNSMSK VQLDWTSSHY NDGSLMVFNP 240 NSDDLFVSSS SDVTSMALKM QGQDLYECAL REAYAKVKVP GFSMAPRDFN NEAVFGIHAL 300 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	6e-16	27	89	11	73	RADIALIS
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.17502	0.0	leaf\| root\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269\|PubMed:11937495}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.02G254200.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	1e-159	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006574483.1	0.0	MYB transcription factor MYB83 isoform X1
Swissprot	Q8S9H7	2e-90	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	I1JI56	0.0	I1JI56_SOYBN; Uncharacterized protein
TrEMBL	K7KAQ8	0.0	K7KAQ8_SOYBN; Uncharacterized protein
STRING	GLYMA02G42140.3	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38090.1	4e-93	MYB family protein

Link Out ? help Back to Top
Phytozome	Glyma.02G254200.2.p

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]