PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.02G252400.1.p | ||||||||
Common Name | GLYMA_02G252400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 164aa MW: 18438.2 Da PI: 7.0571 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.4 | 1.9e-11 | 1 | 43 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+ +N++++ Lr+++Pk + K++ +iL +++Y+k+L Glyma.02G252400.1.p 1 MAERRRRKCLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 43 58*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.32E-14 | 1 | 54 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.7E-10 | 1 | 49 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.3E-9 | 1 | 43 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.37E-9 | 1 | 47 | No hit | No description |
PROSITE profile | PS50888 | 14.723 | 1 | 43 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-14 | 1 | 56 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 3.62E-4 | 85 | 148 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MAERRRRKCL NDRLSMLRSI VPKISKMDRT SILGDTIDYM KELLERIGKL QEEEMEEGTN 60 RINLLGISKE LKPNEVMVRN SPKDTRISIC CATKPGLLLS TVNTLEALGL EIHQCVISSF 120 NDFSIQASCS EVAEQRNCMS QEEIKQALFR NASYGEASVQ NVP* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.55523 | 1e-134 | pod| root| seed coat| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Broadly expressed. {ECO:0000269|PubMed:17088607}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.02G252400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT094423 | 1e-132 | BT094423.1 Soybean clone JCVI-FLGm-18L15 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028248313.1 | 3e-97 | transcription factor bHLH93-like isoform X1 | ||||
Swissprot | Q9LSL1 | 8e-69 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | A0A445LTZ3 | 1e-115 | A0A445LTZ3_GLYSO; Uncharacterized protein | ||||
TrEMBL | K7KAP2 | 1e-115 | K7KAP2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G41964.1 | 1e-116 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1186 | 34 | 103 | Representative plant | OGRP2636 | 11 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 3e-71 | beta HLH protein 93 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.02G252400.1.p |
Publications ? help Back to Top | |||
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